(Q35671023)

9 August 2017

title

Prediction of promoters and enhancers using multiple DNA methylation-associated features (English)

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9 August 2017

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3

Shannath L Merbs

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9 August 2017

Woochang Hwang

1

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9 August 2017

Verity F Oliver

series ordinal

2

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9 August 2017

Heng Zhu

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4

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9 August 2017

Jiang Qian

series ordinal

5

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9 August 2017

language of work or name

English

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publication date

11 June 2015

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9 August 2017

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9 August 2017

volume

16 Suppl 7

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9 August 2017

page(s)

S11

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DNA methylation presents distinct binding sites for human transcription factors

9 August 2017

cites work

1 reference

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Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition

12 July 2018

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Integrative analysis of tissue-specific methylation and alternative splicing identifies conserved transcription factor binding motifs

12 July 2018

1 reference

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Identification of active regulatory regions from DNA methylation data

12 July 2018

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DNA methylation determines nucleosome occupancy in the 5'-CpG islands of tumor suppressor genes

12 July 2018

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Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions

12 July 2018

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12 July 2018

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12 July 2018

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The accessible chromatin landscape of the human genome

12 July 2018

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Complete pipeline for Infinium(®) Human Methylation 450K BeadChip data processing using subset quantile normalization for accurate DNA methylation estimation.

12 July 2018

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Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells

12 July 2018

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CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing

12 July 2018

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Discriminative prediction of mammalian enhancers from DNA sequence.

12 July 2018

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Nucleosomes protect DNA from DNA methylation in vivo and in vitro.

12 July 2018

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Mapping and analysis of chromatin state dynamics in nine human cell types

12 July 2018

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Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells

12 July 2018

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Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data

12 July 2018

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12 July 2018

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12 July 2018

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Genome-wide conserved consensus transcription factor binding motifs are hyper-methylated

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474542

Relationship between nucleosome positioning and DNA methylation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474542

Human DNA methylomes at base resolution show widespread epigenomic differences

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474542

ChIP-seq: advantages and challenges of a maturing technology

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474542

High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing

12 July 2018

1 reference

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The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474542

Mapping and quantifying mammalian transcriptomes by RNA-Seq

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474542

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474542

Genome-wide mapping of in vivo protein-DNA interactions

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474542

In vivo enhancer analysis of human conserved non-coding sequences

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474542

DNA methylation profiling of human chromosomes 6, 20 and 22

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474542

DNA methylation and gene silencing in cancer

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474542

Reduced representation bisulfite sequencing for comparative high-resolution DNA methylation analysis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474542

Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474542

Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474542

Epigenetic reprogramming in mammalian development

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474542

Dynamic readers for 5-(hydroxy)methylcytosine and its oxidized derivatives

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474542

DNA-binding factors shape the mouse methylome at distal regulatory regions

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4474542

10.1186/1471-2164-16-S7-S11

25 September 2018

Identifiers

DOI

1 reference

9 August 2017

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9 August 2017

1 reference