(Q36304147)

13 August 2017

4 references

25 June 2019

19 September 2019

14 November 2020

25 November 2020

Immunoinformatics and epitope prediction in the age of genomic medicine (English)

1 reference

biomedical investigative technique

13 August 2017

1 reference

19 September 2019

1 reference

14 November 2020

1 reference

25 November 2020

2

Oliver Kohlbacher

1 reference

13 August 2017

Linus Backert

1

1 reference

13 August 2017

20 November 2015

5 references

13 August 2017

25 June 2019

19 September 2019

14 November 2020

25 November 2020

5 references

13 August 2017

25 June 2019

19 September 2019

14 November 2020

25 November 2020

7

1 reference

13 August 2017

119

1 reference

Creative Commons Attribution 4.0 International

13 August 2017

4 references

25 June 2019

19 September 2019

14 November 2020

https://scigraph.springernature.com/pub.10.1186/s13073-015-0245-0

25 November 2020

0 references

0 references

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30 September 2017

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HLA DNA typing: past, present, and future

30 September 2017

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TEPITOPEpan: extending TEPITOPE for peptide binding prediction covering over 700 HLA-DR molecules

30 September 2017

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30 September 2017

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30 September 2017

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30 September 2017

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30 September 2017

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30 September 2017

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30 September 2017

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30 September 2017

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FRED--a framework for T-cell epitope detection

30 September 2017

1 reference

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30 September 2017

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30 September 2017

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A mathematical framework for the selection of an optimal set of peptides for epitope-based vaccines

30 September 2017

1 reference

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COBEpro: a novel system for predicting continuous B-cell epitopes

30 September 2017

1 reference

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Pan-specific MHC class I predictors: a benchmark of HLA class I pan-specific prediction methods

30 September 2017

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30 September 2017

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NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8-11

30 September 2017

1 reference

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A systematic assessment of MHC class II peptide binding predictions and evaluation of a consensus approach

30 September 2017

1 reference

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Evaluation of MHC class I peptide binding prediction servers: applications for vaccine research

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

NetMHCpan, a method for quantitative predictions of peptide binding to any HLA-A and -B locus protein of known sequence

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

POPI: predicting immunogenicity of MHC class I binding peptides by mining informative physicochemical properties

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

SVRMHC prediction server for MHC-binding peptides

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

Virus-epitope vaccine design: informatic matching the HLA-I polymorphism to the virus genome.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

A community resource benchmarking predictions of peptide binding to MHC-I molecules

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

A consensus epitope prediction approach identifies the breadth of murine T(CD8+)-cell responses to vaccinia virus

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

PRED(TAP): a system for prediction of peptide binding to the human transporter associated with antigen processing

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

EpiJen: a server for multistep T cell epitope prediction

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

AntiJen: a quantitative immunology database integrating functional, thermodynamic, kinetic, biophysical, and cellular data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

Pcleavage: an SVM based method for prediction of constitutive proteasome and immunoproteasome cleavage sites in antigenic sequences

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

Integrated modeling of the major events in the MHC class I antigen processing pathway

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

MULTIPRED: a computational system for prediction of promiscuous HLA binding peptides

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

Differential proteasomal processing of hydrophobic and hydrophilic protein regions: contribution to cytotoxic T lymphocyte epitope clustering in HIV-1-Nef.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

Prediction of MHC class I binding peptides, using SVMHC

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

Methods for prediction of peptide binding to MHC molecules: a comparative study.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

A neural network model approach to the study of human TAP transporter

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

An algorithm for the prediction of proteasomal cleavages

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

SYFPEITHI: database for MHC ligands and peptide motifs

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

Substrate selection by transporters associated with antigen processing occurs during peptide binding to TAP.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

Relationship between peptide selectivities of human transporters associated with antigen processing and HLA class I molecules

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

Structural requirements for the interaction between class II MHC molecules and peptide antigens.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

Comparison of the predicted and observed secondary structure of T4 phage lysozyme

30 September 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

30 September 2017

https://api.crossref.org/works/10.1186%2FS13073-015-0245-0

EpiToolKit--a web-based workbench for vaccine design

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

Computational and bioinformatics techniques for immunology

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

Efficient peptide-MHC-I binding prediction for alleles with few known binders.

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

Predicting proteasomal cleavage sites: a comparison of available methods

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

Allele-specific motifs revealed by sequencing of self-peptides eluted from MHC molecules

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

Role of peptide processing predictions in T cell epitope identification: contribution of different prediction programs.

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

NetMHCstab - predicting stability of peptide-MHC-I complexes; impacts for cytotoxic T lymphocyte epitope discovery.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

NetMHCcons: a consensus method for the major histocompatibility complex class I predictions

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

Universal peptide vaccines - optimal peptide vaccine design based on viral sequence conservation

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

Modeling the adaptive immune system: predictions and simulations.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

Learning MHC I--peptide binding.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

Hidden Markov model-based prediction of antigenic peptides that interact with MHC class II molecules.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

Benchmarking B cell epitope prediction: underperformance of existing methods

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

Discovery of promiscuous HLA-II-restricted T cell epitopes with TEPITOPE.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

Examining the independent binding assumption for binding of peptide epitopes to MHC-I molecules

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

Prediction of MHC class I binding peptides using profile motifs.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

ProPred: prediction of HLA-DR binding sites.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

A theoretical approach towards the identification of cleavage-determining amino acid motifs of the 20 S proteasome.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

Two complementary methods for predicting peptides binding major histocompatibility complex molecules.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4654883

The regulatory landscape for actively personalized cancer immunotherapies

22 September 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13073-015-0245-0

An introduction to ROC analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13073-015-0245-0

T-cell epitope prediction based on self-tolerance

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13073-015-0245-0

In SilicoTools for Predicting Peptides Binding to HLA-Class II Molecules: More Confusion than Conclusion

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13073-015-0245-0

Multiple Instance Learning Allows MHC Class II Epitope Predictions Across Alleles

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13073-015-0245-0

The role of the proteasome in generating cytotoxic T-cell epitopes: insights obtained from improved predictions of proteasomal cleavage

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13073-015-0245-0

Structural determinants for specific recognition by T4 endonuclease V

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26589500

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S13073-015-0245-0

1 reference

PMC publication ID

4654883

Dimensions Publication ID

13 August 2017

0 references

1 reference

PMC publication ID

4654883

13 August 2017

PubMed publication ID

26589500

1 reference

PMC publication ID

4654883