Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q37061181)
Watch
English
Comprehensive prediction in 78 human cell lines reveals rigidity and compactness of transcription factor dimers
scientific article published on 03 April 2013
In more languages
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMCID
3730104
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23554463%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 February 2020
title
Comprehensive prediction in 78 human cell lines reveals rigidity and compactness of transcription factor dimers
(English)
1 reference
stated in
Europe PubMed Central
PMCID
3730104
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23554463%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 February 2020
author
Aleksander Jankowski
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMCID
3730104
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23554463%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 February 2020
Ewa Szczurek
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMCID
3730104
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23554463%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 February 2020
Ralf Jauch
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMCID
3730104
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23554463%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 February 2020
Shyam Prabhakar
series ordinal
5
object named as
Shyam Prabhakar
1 reference
stated in
Europe PubMed Central
PMCID
3730104
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23554463%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 February 2020
author name string
Jerzy Tiuryn
series ordinal
4
1 reference
stated in
Europe PubMed Central
PMCID
3730104
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23554463%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 February 2020
publication date
3 April 2013
1 reference
stated in
Europe PubMed Central
PMCID
3730104
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23554463%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 February 2020
published in
Genome Research
1 reference
stated in
Europe PubMed Central
PMCID
3730104
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23554463%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 February 2020
volume
23
1 reference
stated in
Europe PubMed Central
PMCID
3730104
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23554463%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 February 2020
issue
8
1 reference
stated in
Europe PubMed Central
PMCID
3730104
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23554463%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 February 2020
page(s)
1307-1318
1 reference
stated in
Europe PubMed Central
PMCID
3730104
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23554463%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 February 2020
cites work
Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
Detection of interacting transcription factors in human tissues using predicted DNA binding affinity
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
Deciphering the Sox-Oct partner code by quantitative cooperativity measurements
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
Pioneer transcription factors: establishing competence for gene expression
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
Animal transcription networks as highly connected, quantitative continua
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
Structural basis for the cooperative DNA recognition by Smad4 MH1 dimers
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
Inferring transcription factor complexes from ChIP-seq data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
A user's guide to the encyclopedia of DNA elements (ENCODE)
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
Finding subtypes of transcription factor motif pairs with distinct regulatory roles
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
Using a structural and logics systems approach to infer bHLH-DNA binding specificity determinants
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
Nucleosome-mediated cooperativity between transcription factors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
Evolution of the repertoire of nuclear receptor binding sites in genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
Structure of an Ebf1:DNA complex reveals unusual DNA recognition and structural homology with Rel proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
Structure of the FoxM1 DNA-recognition domain bound to a promoter sequence
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
An atlas of combinatorial transcriptional regulation in mouse and man
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
DNA specificity determinants associate with distinct transcription factor functions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
Detection of nonneutral substitution rates on mammalian phylogenies
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
F-Seq: a feature density estimator for high-throughput sequence tags
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
Integration of external signaling pathways with the core transcriptional network in embryonic stem cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
Quantifying similarity between motifs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
Direct interactions of Runx2 and canonical Wnt signaling induce FGF18.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
Computational analysis of tissue-specific combinatorial gene regulation: predicting interaction between transcription factors in human tissues
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS)
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
Identification of regulatory targets of tissue-specific transcription factors: application to retina-specific gene regulation.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
Coot: model-building tools for molecular graphics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
Structural basis of androgen receptor binding to selective androgen response elements.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
Transcription regulation and animal diversity
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
Lymphoid enhancer factor-1 and beta-catenin inhibit Runx2-dependent transcriptional activation of the osteocalcin promoter
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
Hepatocyte nuclear factor 1 alpha controls renal expression of the Npt1-Npt4 anionic transporter locus
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
Predicting transcription factor synergism
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
The Protein Data Bank
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
Structure of the DNA-binding domains from NFAT, Fos and Jun bound specifically to DNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
Crystal structure of p50/p65 heterodimer of transcription factor NF-kappaB bound to DNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
Synergistic activation of the fibroblast growth factor 4 enhancer by Sox2 and Oct-3 depends on protein-protein interactions facilitated by a specific spatial arrangement of factor binding sites
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
TRANSFAC: a database on transcription factors and their DNA binding sites
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
The p53 protein is an unusually shaped tetramer that binds directly to DNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
Binding of disparate transcriptional activators to nucleosomal DNA is inherently cooperative
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
Recognition DNA sequences of interferon regulatory factor 1 (IRF-1) and IRF-2, regulators of cell growth and the interferon system
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
Purified hepatocyte nuclear factor 1 interacts with a family of hepatocyte-specific promoters
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
Direct repeats as selective response elements for the thyroid hormone, retinoic acid, and vitamin D3 receptors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
29 September 2017
Cofactor binding evokes latent differences in DNA binding specificity between Hox proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
27 June 2018
How p53 binds DNA as a tetramer
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
27 June 2018
On the power of profiles for transcription factor binding site detection.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3730104
retrieved
4 September 2018
Identifiers
DOI
10.1101/GR.154922.113
1 reference
stated in
Europe PubMed Central
PMCID
3730104
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23554463%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 February 2020
PMCID
3730104
1 reference
stated in
Europe PubMed Central
PMCID
3730104
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23554463%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 February 2020
PubMed ID
23554463
1 reference
stated in
Europe PubMed Central
PMCID
3730104
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23554463%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 February 2020
ResearchGate publication ID
236105329
0 references
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit