(Q37301668)

19 August 2017

1 reference

title

RNA structure and modeling: progress and techniques (English)

1 reference

19 August 2017

Dinggeng Chai

1

1 reference

19 August 2017

publication date

1 January 2008

1 reference

Progress in Molecular Biology and Translational Science

19 August 2017

published in

1 reference

19 August 2017

volume

82

1 reference

19 August 2017

page(s)

71-100

1 reference

Crystal structure of a bacterial ribonuclease P RNA.

19 August 2017

cites work

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Analysis of RNA motifs

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

The non-Watson-Crick base pairs and their associated isostericity matrices

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

A functional ribosomal RNA tertiary structure involves a base triple interaction

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

The frameshift signal of HIV-1 involves a potential intramolecular triplex RNA structure

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

RNA tertiary interactions in the large ribosomal subunit: the A-minor motif

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

A universal mode of helix packing in RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Pseudoknots: RNA structures with diverse functions

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Crystal structure of a hepatitis delta virus ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Crystal structure of a group I ribozyme domain: principles of RNA packing

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

The structure of the Holliday junction, and its resolution

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

An examination of coaxial stacking of helical stems in a pseudoknot motif: the gene 32 messenger RNA pseudoknot of bacteriophage T2

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

A molecular dynamics simulation study of coaxial stacking in RNA

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

The architectural organization and mechanistic function of group II intron structural elements

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Co-translational Folding of an Eukaryotic Multidomain Protein in a Prokaryotic Translation System

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Origin of life: The RNA world

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Folding of a universal ribozyme: the ribonuclease P RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Crystal structure of the specificity domain of ribonuclease P

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Basis for structural diversity in homologous RNAs

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Crystal structure of the RNA component of bacterial ribonuclease P

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Three-dimensional structure of a hammerhead ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

The crystal structure of an all-RNA hammerhead ribozyme: a proposed mechanism for RNA catalytic cleavage

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Tertiary contacts distant from the active site prime a ribozyme for catalysis

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Structural basis of glmS ribozyme activation by glucosamine-6-phosphate

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Structural investigation of the GlmS ribozyme bound to Its catalytic cofactor

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Barriers to intron promiscuity in bacteria

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Bacterial group II introns: not just splicing

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Group II introns break new boundaries: presence in a bilaterian's genome

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Euglena gracilis chloroplast ribosomal protein operon: a new chloroplast gene for ribosomal protein L5 and description of a novel organelle intron category designated group III

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Archaeal introns: splicing, intercellular mobility and evolution.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Atomic level architecture of group I introns revealed

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

A three-dimensional model of a group II intron RNA and its interaction with the intron-encoded reverse transcriptase

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Crystal Structure of a Self-Spliced Group II Intron

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

snRNAs as the catalysts of pre-mRNA splicing

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Structure of functionally activated small ribosomal subunit at 3.3 angstroms resolution

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Structure of the 30S ribosomal subunit

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

The Three-Dimensional Structure of Yeast Phenylalanine Transfer RNA: Shape of the Molecule at 5.5-Å Resolution

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Structure of yeast phenylalanine tRNA at 3 Å resolution

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

The crystal structure of tRNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Small RNAs correspond to centromere heterochromatic repeats

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Endogenous and silencing-associated small RNAs in plants

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

MicroRNAs and other tiny endogenous RNAs in C. elegans

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

MicroRNA targeting specificity in mammals: determinants beyond seed pairing

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Determinants of targeting by endogenous and exogenous microRNAs and siRNAs

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

New tricks for an old dogma: riboswitches as cis-only regulatory systems

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Point mutations in the stem-loop at the 3' end of mouse histone mRNA reduce expression by reducing the efficiency of 3' end formation

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Enzymatic approaches to probing of RNA secondary and tertiary structure

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Yeast tRNAAsp tertiary structure in solution and areas of interaction of the tRNA with aspartyl-tRNA synthetase. A comparative study of the yeast phenylalanine system by phosphate alkylation experiments with ethylnitrosourea

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Modification interference analysis of reactions using RNA substrates

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

A chemical modification method for the structural analysis of RNA and RNA-protein complexes within living cells

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Mapping nucleic acid structure by hydroxyl radical cleavage

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Directed hydroxyl radical probing using iron(II) tethered to RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

The three-dimensional architecture of the class I ligase ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Communication between RNA folding domains revealed by folding of circularly permuted ribozymes

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Deletion of the P5abc peripheral element accelerates early and late folding steps of the Tetrahymena group I ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

A chemogenetic approach to RNA function/structure analysis

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Nucleotide analog interference mapping

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Chemical probing of RNA by nucleotide analog interference mapping

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Backbone and nucleobase contacts to glucosamine-6-phosphate in the glmS ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

A folding control element for tertiary collapse of a group II intron ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

A kinetic intermediate that regulates proper folding of a group II intron RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Thionucleobases as intrinsic photoaffinity probes of nucleic acid structure and nucleic acid-protein interactions.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Use of circular permutation and end modification to position photoaffinity probes for analysis of RNA structure

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Photoaffinity cross-linking and RNA structure analysis

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Site-specific RNA crosslinking with 4-thiouridine

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Site-specific modification of pre-mRNA: the 2'-hydroxyl groups at the splice sites

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Circularly permuted tRNAs as specific photoaffinity probes of ribonuclease P RNA structure.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Structure and function of eukaryotic Ribonuclease P RNA

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Cation-specific structural accommodation within a catalytic RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

x ray crystallography.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

RNAPack: an integrated NMR approach to RNA structure determination

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

NMR spectroscopy of RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Structure determination of large biological RNAs

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

NMR techniques for very large proteins and rnas in solution

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Time-resolved NMR studies of RNA folding

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

NMR studies of RNA dynamics and structural plasticity using NMR residual dipolar couplings.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Exploring the energy landscape of a small RNA hairpin

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Mass spectrometry of RNA: linking the genome to the proteome

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Toward multiplexing the application of solvent accessibility probes for the investigation of RNA three-dimensional structures by electrospray ionization-Fourier transform mass spectrometry

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Untying the FIV frameshifting pseudoknot structure by MS3D.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Intermediates and kinetic traps in the folding of a large ribozyme revealed by circular dichroism and UV absorbance spectroscopies and catalytic activity

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Kinetic intermediates trapped by native interactions in RNA folding

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Single-molecule studies on DNA and RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Probing complex RNA structures by mechanical force.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Nonequilibrium Equality for Free Energy Differences

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Equilibrium information from nonequilibrium measurements in an experimental test of Jarzynski's equality

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Single-molecule RNA science

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Single-molecule studies highlight conformational heterogeneity in the early folding steps of a large ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Folding of the hairpin ribozyme in its natural conformation achieves close physical proximity of the loops

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Structure and activity of the hairpin ribozyme in its natural junction conformation: effect of metal ions

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

A four-way junction accelerates hairpin ribozyme folding via a discrete intermediate

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Observation of internal cleavage and ligation reactions of a ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Observing single biomolecules at work with the atomic force microscope.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Atomic force microscopy reveals DNA bending during group II intron ribonucleoprotein particle integration into double-stranded DNA

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Cryo-electron microscopy as an investigative tool: the ribosome as an example

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Transfer RNA in the hybrid P/E state: correlating molecular dynamics simulations with cryo-EM data

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Structures of modified eEF2 80S ribosome complexes reveal the role of GTP hydrolysis in translocation

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Reconfiguration of yeast 40S ribosomal subunit domains by the translation initiation multifactor complex.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Cryo-EM visualization of transfer messenger RNA with two SmpBs in a stalled ribosome

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Fitting of high-resolution structures into electron microscopy reconstruction images.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Fitting low-resolution cryo-EM maps of proteins using constrained geometric simulations.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Biological cryo atomic force microscopy: a brief review

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Three-dimensional interaction of Phi29 pRNA dimer probed by chemical modification interference, cryo-AFM, and cross-linking

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Large-scale movement of elongation factor G and extensive conformational change of the ribosome during translocation

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

The 3D arrangement of the 23 S and 5 S rRNA in the Escherichia coli 50 S ribosomal subunit based on a cryo-electron microscopic reconstruction at 7.5 A resolution

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

On the role of magnesium ions in RNA stability

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Stabilization of RNA tertiary structure by monovalent cations

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

1 reference

7 January 2021

A guide to ions and RNA structure

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Mobile group II introns

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Self-splicing of a group IIC intron: 5' exon recognition and alternative 5' splicing events implicate the stem-loop motif of a transcriptional terminator

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Energetics and cooperativity of tertiary hydrogen bonds in RNA structure

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

1 reference

7 January 2021

Bridging the gap in RNA structure prediction.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

RNA secondary structures and their prediction

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

How do RNA folding algorithms work?

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Prediction of RNA secondary structure by free energy minimization

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

RNA secondary structure prediction by centroids in a Boltzmann weighted ensemble

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

RNAshapes: an integrated RNA analysis package based on abstract shapes.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Prediction of common secondary structures of RNAs: a genetic algorithm approach

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

Dynalign: an algorithm for finding the secondary structure common to two RNA sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

The combination of symbolic and numerical computation for three-dimensional modeling of RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

All-atom homology model of the Escherichia coli 30S ribosomal subunit.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

A quantitative model of the Escherichia coli 16 S RNA in the 30 S ribosomal subunit.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

The hairpin ribozyme: from crystal structure to function

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6603%2808%2900003-2

7 January 2021

10.1016/S0079-6603(08)00003-2

Identifiers

DOI

1 reference

19 August 2017

1 reference