(Q38093803)

28 August 2017

title

RNA processing and decay in plastids (English)

1 reference

28 August 2017

1

Arnaud Germain

1 reference

28 August 2017

Amber M Hotto

2

1 reference

28 August 2017

Alice Barkan

series ordinal

3

1 reference

28 August 2017

David B Stern

series ordinal

4

1 reference

28 August 2017

publication date

27 March 2013

1 reference

Wiley interdisciplinary reviews. RNA

28 August 2017

published in

1 reference

28 August 2017

volume

4

1 reference

28 August 2017

issue

3

1 reference

28 August 2017

page(s)

295-316

1 reference

Cyanophora paradoxa Genome Elucidates Origin of Photosynthesis in Algae and Plants

28 August 2017

cites work

1 reference

Endosymbiotic gene transfer: organelle genomes forge eukaryotic chromosomes

21 January 2018

1 reference

The transcription machineries of plant mitochondria and chloroplasts: Composition, function, and regulation.

21 January 2018

1 reference

Cryo-EM study of the spinach chloroplast ribosome reveals the structural and functional roles of plastid-specific ribosomal proteins

21 January 2018

1 reference

Complex chloroplast RNA metabolism: just debugging the genetic programme?

21 January 2018

1 reference

Plastid biotechnology: food, fuel, and medicine for the 21st century

21 January 2018

1 reference

A pentatricopeptide repeat protein is essential for RNA editing in chloroplasts

21 January 2018

1 reference

The PPR motif - a TPR-related motif prevalent in plant organellar proteins

21 January 2018

1 reference

A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites.

21 January 2018

1 reference

A comparative genomics approach identifies a PPR-DYW protein that is essential for C-to-U editing of the Arabidopsis chloroplast accD transcript

21 January 2018

1 reference

Sequence elements critical for efficient RNA editing of a tobacco chloroplast transcript in vivo and in vitro

21 January 2018

1 reference

Involvement of a site-specific trans-acting factor and a common RNA-binding protein in the editing of chloroplast mRNAs: development of a chloroplast in vitro RNA editing system

21 January 2018

1 reference

21 January 2018

Organellar RNA editing

1 reference

Chloroplast RNA metabolism

21 January 2018

1 reference

Two interacting proteins are necessary for the editing of the NdhD-1 site in Arabidopsis plastids.

21 January 2018

1 reference

Multiple organellar RNA editing factor (MORF) family proteins are required for RNA editing in mitochondria and plastids of plants

21 January 2018

1 reference

RIP1, a member of an Arabidopsis protein family, interacts with the protein RARE1 and broadly affects RNA editing

21 January 2018

1 reference

On the evolution of RNA editing

21 January 2018

1 reference

How a neutral evolutionary ratchet can build cellular complexity

21 January 2018

1 reference

The nucleocytoplasmic conflict, a driving force for the emergence of plant organellar RNA editing

21 January 2018

1 reference

Ancestral chloroplast genome in Mesostigma viride reveals an early branch of green plant evolution

21 January 2018

1 reference

The chloroplast genome sequence of Chara vulgaris sheds new light into the closest green algal relatives of land plants

21 January 2018

1 reference

The Chlamydomonas reinhardtii plastid chromosome: islands of genes in a sea of repeats

21 January 2018

1 reference

Group II introns: mobile ribozymes that invade DNA.

21 January 2018

1 reference

The ins and outs of editing and splicing of plastid RNAs: lessons from parasitic plants

21 January 2018

1 reference

Trans-splicing of organelle introns--a detour to continuous RNAs

21 January 2018

1 reference

Cis- and trans-splicing of group II introns in plant mitochondria

21 January 2018

1 reference

RNA splicing: group I intron crystal structures reveal the basis of splice site selection and metal ion catalysis

21 January 2018

1 reference

Visualizing Group II Intron Catalysis through the Stages of Splicing

21 January 2018

1 reference

An organellar maturase associates with multiple group II introns

21 January 2018

1 reference

A novel multifunctional factor involved in trans-splicing of chloroplast introns in Chlamydomonas

21 January 2018

1 reference

21 January 2018

1 reference

Identification of an RNA-protein complex involved in chloroplast group II intron trans-splicing in Chlamydomonas reinhardtii

21 January 2018

1 reference

A CRM domain protein functions dually in group I and group II intron splicing in land plant chloroplasts

21 January 2018

1 reference

Two CRM protein subfamilies cooperate in the splicing of group IIB introns in chloroplasts

21 January 2018

1 reference

Recruitment of a peptidyl-tRNA hydrolase as a facilitator of group II intron splicing in chloroplasts

21 January 2018

1 reference

A short PPR protein required for the splicing of specific group II introns in angiosperm chloroplasts

21 January 2018

1 reference

A plant-specific RNA-binding domain revealed through analysis of chloroplast group II intron splicing

21 January 2018

1 reference

Group II intron splicing factors derived by diversification of an ancient RNA-binding domain

21 January 2018

1 reference

CRS1 is a novel group II intron splicing factor that was derived from a domain of ancient origin.

21 January 2018

1 reference

The pentatricopeptide repeat gene OTP51 with two LAGLIDADG motifs is required for the cis-splicing of plastid ycf3 intron 2 in Arabidopsis thaliana.

21 January 2018

1 reference

Chloroplast RH3 DEAD box RNA helicases in maize and Arabidopsis function in splicing of specific group II introns and affect chloroplast ribosome biogenesis

21 January 2018

1 reference

A pentatricopeptide repeat protein facilitates the trans-splicing of the maize chloroplast rps12 pre-mRNA.

21 January 2018

1 reference

A member of the Whirly family is a multifunctional RNA- and DNA-binding protein that is essential for chloroplast biogenesis

21 January 2018

1 reference

A ribonuclease III domain protein functions in group II intron splicing in maize chloroplasts

21 January 2018

1 reference

The pentatricopeptide repeat protein PPR5 stabilizes a specific tRNA precursor in maize chloroplasts

21 January 2018

1 reference

Arabidopsis orthologs of maize chloroplast splicing factors promote splicing of orthologous and species-specific group II introns.

21 January 2018

1 reference

The CRM domain: an RNA binding module derived from an ancient ribosome-associated protein

21 January 2018

1 reference

Nuclear mutations that block group II RNA splicing in maize chloroplasts reveal several intron classes with distinct requirements for splicing factors

21 January 2018

1 reference

Comparative analysis of splicing of the complete set of chloroplast group II introns in three higher plant mutants

21 January 2018

1 reference

Tissue-dependent plastid RNA splicing in maize: transcripts from four plastid genes are predominantly unspliced in leaf meristems and roots

21 January 2018

1 reference

The primary transcriptome of barley chloroplasts: numerous noncoding RNAs and the dominating role of the plastid-encoded RNA polymerase

21 January 2018

1 reference

Control of plastid gene expression: 3' inverted repeats act as mRNA processing and stabilizing elements, but do not terminate transcription.

21 January 2018

1 reference

Comparative analysis of plastid transcription profiles of entire plastid chromosomes from tobacco attributed to wild-type and PEP-deficient transcription machineries.

21 January 2018

1 reference

Unexpected Diversity of Chloroplast Noncoding RNAs as Revealed by Deep Sequencing of the Arabidopsis Transcriptome

21 January 2018

1 reference

Site-specific binding of a PPR protein defines and stabilizes 5' and 3' mRNA termini in chloroplasts

21 January 2018

1 reference

RNA binding and RNA remodeling activities of the half-a-tetratricopeptide (HAT) protein HCF107 underlie its effects on gene expression

21 January 2018

1 reference

The chloroplast protein disulfide isomerase RB60 reacts with a regulatory disulfide of the RNA-binding protein RB47.

21 January 2018

1 reference

Protein phosphorylation regulates in vitro spinach chloroplast petD mRNA 3'-untranslated region stability, processing, and degradation.

21 January 2018

1 reference

The cutting crew - ribonucleases are key players in the control of plastid gene expression.

21 January 2018

1 reference

Pentatricopeptide repeat proteins: a socket set for organelle gene expression.

21 January 2018

1 reference

PNPase activity determines the efficiency of mRNA 3'-end processing, the degradation of tRNA and the extent of polyadenylation in chloroplasts

21 January 2018

1 reference

Mutational analysis of Arabidopsis chloroplast polynucleotide phosphorylase reveals roles for both RNase PH core domains in polyadenylation, RNA 3'-end maturation and intron degradation.

21 January 2018

1 reference

RNR1, a 3'-5' exoribonuclease belonging to the RNR superfamily, catalyzes 3' maturation of chloroplast ribosomal RNAs in Arabidopsis thaliana.

21 January 2018

1 reference

Ribosomal RNA processing and an RNase R family member in chloroplasts of Arabidopsis.

21 January 2018

1 reference

Ribonuclease II preserves chloroplast RNA homeostasis by increasing mRNA decay rates, and cooperates with polynucleotide phosphorylase in 3' end maturation

21 January 2018

1 reference

Chloroplast RNase J compensates for inefficient transcription termination by removal of antisense RNA.

21 January 2018

1 reference

Knockout of the plastid RNase E leads to defective RNA processing and chloroplast ribosome deficiency.

21 January 2018

1 reference

The RNA-binding proteins CSP41a and CSP41b may regulate transcription and translation of chloroplast-encoded RNAs in Arabidopsis.

21 January 2018

1 reference

Arabidopsis CSP41 proteins form multimeric complexes that bind and stabilize distinct plastid transcripts.

21 January 2018

1 reference

A single Arabidopsis organellar protein has RNase P activity.

21 January 2018

1 reference

Arabidopsis encodes four tRNase Z enzymes

21 January 2018

1 reference

Mechanism of RNA stabilization and translational activation by a pentatricopeptide repeat protein

21 January 2018

1 reference

Selection of Shine-Dalgarno sequences in plastids

21 January 2018

1 reference

Polynucleotide phosphorylase functions as both an exonuclease and a poly(A) polymerase in spinach chloroplasts

21 January 2018

1 reference

Integration of chloroplast nucleic acid metabolism into the phosphate deprivation response in Chlamydomonas reinhardtii

21 January 2018

1 reference

Two exoribonucleases act sequentially to process mature 3'-ends of atp9 mRNAs in Arabidopsis mitochondria

21 January 2018

1 reference

Emergence of the β-CASP ribonucleases: highly conserved and ubiquitous metallo-enzymes involved in messenger RNA maturation and degradation

21 January 2018

1 reference

Secondary Structures Common to Chloroplast mRNA 3′-Untranslated Regions Direct Cleavage by CSP41, an Endoribonuclease Belonging to the Short Chain Dehydrogenase/Reductase Superfamily

21 January 2018

1 reference

The RNase E/G-type endoribonuclease of higher plants is located in the chloroplast and cleaves RNA similarly to the E. coli enzyme

21 January 2018

1 reference

RHON1 is a novel ribonucleic acid-binding protein that supports RNase E function in the Arabidopsis chloroplast

21 January 2018

1 reference

Nucleic acid-binding specificities of tobacco chloroplast ribonucleoproteins

21 January 2018

1 reference

Domains required for nucleic acid binding activities in chloroplast ribonucleoproteins

21 January 2018

1 reference

Arabidopsis chloroplast RNA binding proteins CP31A and CP29A associate with large transcript pools and confer cold stress tolerance by influencing multiple chloroplast RNA processing steps

21 January 2018

1 reference

Chloroplast ribonucleoprotein CP31A is required for editing and stability of specific chloroplast mRNAs.

21 January 2018

1 reference

Molecular cloning of the maize gene crp1 reveals similarity between regulators of mitochondrial and chloroplast gene expression

21 January 2018

1 reference

The Nac2 gene of Chlamydomonas encodes a chloroplast TPR-like protein involved in psbD mRNA stability

21 January 2018

1 reference

The HAT helix, a repetitive motif implicated in RNA processing.

21 January 2018

1 reference

Characterization of Tbc2, a nucleus-encoded factor specifically required for translation of the chloroplast psbC mRNA in Chlamydomonas reinhardtii

21 January 2018

1 reference

Expression of plastid genes: organelle-specific elaborations on a prokaryotic scaffold

21 January 2018

1 reference

A combinatorial amino acid code for RNA recognition by pentatricopeptide repeat proteins.

21 January 2018

1 reference

The function of RH22, a DEAD RNA helicase, in the biogenesis of the 50S ribosomal subunits of Arabidopsis chloroplasts.

21 January 2018

1 reference

A DEAD box protein is required for formation of a hidden break in Arabidopsis chloroplast 23S rRNA.

21 January 2018

1 reference

PRBP plays a role in plastid ribosomal RNA maturation and chloroplast biogenesis in Nicotiana benthamiana.

21 January 2018

1 reference

Arabidopsis BPG2: a phytochrome-regulated gene whose protein product binds to plastid ribosomal RNAs.

21 January 2018

1 reference

The chloroplast protein BPG2 functions in brassinosteroid-mediated post-transcriptional accumulation of chloroplast rRNA.

21 January 2018

1 reference

Mutations in SUPPRESSOR OF VARIEGATION1, a factor required for normal chloroplast translation, suppress var2-mediated leaf variegation in Arabidopsis

21 January 2018

1 reference

Arabidopsis emb175 and other ppr knockout mutants reveal essential roles for pentatricopeptide repeat (PPR) proteins in plant embryogenesis.

21 January 2018

1 reference

DCL is a plant-specific protein required for plastid ribosomal RNA processing and embryo development

21 January 2018

1 reference

Altered expression of the Arabidopsis ortholog of DCL affects normal plant development

21 January 2018

1 reference

An Arabidopsis thaliana virescent mutant reveals a role for ClpR1 in plastid development.

21 January 2018

1 reference

Large scale comparative proteomics of a chloroplast Clp protease mutant reveals folding stress, altered protein homeostasis, and feedback regulation of metabolism.

21 January 2018

1 reference

Downregulation of ClpR2 leads to reduced accumulation of the ClpPRS protease complex and defects in chloroplast biogenesis in Arabidopsis.

21 January 2018

1 reference

Cotranscription of 5S rRNA-tRNA(Arg)(ACG) from Brassica napus chloroplasts and processing of their intergenic spacer

21 January 2018

1 reference

Mini-III, an unusual member of the RNase III family of enzymes, catalyses 23S ribosomal RNA maturation in B. subtilis

21 January 2018

1 reference

Overaccumulation of the chloroplast antisense RNA AS5 is correlated with decreased abundance of 5S rRNA in vivo and inefficient 5S rRNA maturation in vitro

21 January 2018

1 reference

Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.

21 January 2018

1 reference

Unexpected diversity of RNase P, an ancient tRNA processing enzyme: challenges and prospects

21 January 2018

1 reference

RNase P without RNA: identification and functional reconstitution of the human mitochondrial tRNA processing enzyme

21 January 2018

1 reference

PRORP proteins support RNase P activity in both organelles and the nucleus in Arabidopsis

21 January 2018

1 reference

The making of tRNAs and more - RNase P and tRNase Z.

21 January 2018

1 reference

Dual targeting of the tRNA nucleotidyltransferase in plants: not just the signal

21 January 2018

1 reference

Plastid non-coding RNAs: emerging candidates for gene regulation

21 January 2018

1 reference

Protein-mediated protection as the predominant mechanism for defining processed mRNA termini in land plant chloroplasts

21 January 2018

1 reference

Short non-coding RNA fragments accumulating in chloroplasts: footprints of RNA binding proteins?

21 January 2018

1 reference

Repetitive extragenic palindromic sequences: a major component of the bacterial genome

21 January 2018

1 reference

Direct evidence for selective modulation of psbA, rpoA, rbcL and 16S RNA stability during barley chloroplast development

21 January 2018

1 reference

Changes in Chloroplast mRNA Stability during Leaf Development

21 January 2018

1 reference

Transcription of tufA and other chloroplast-encoded genes is controlled by a circadian clock in Chlamydomonas

21 January 2018

1 reference

A wheat histone H3 promoter confers cell division-dependent and -independent expression of the gus A gene in transgenic rice plants

21 January 2018

1 reference

Ribosomes initiating translation of the hbs mRNA protect it from 5'-to-3' exoribonucleolytic degradation by RNase J1.

21 January 2018

1 reference

Role of Bacillus subtilis RNase J1 endonuclease and 5'-exonuclease activities in trp leader RNA turnover.

21 January 2018

1 reference

RNA polyadenylation and decay in mitochondria and chloroplasts

21 January 2018

1 reference

The yeast POP2 gene encodes a nuclease involved in mRNA deadenylation

21 January 2018

1 reference

Gene affecting longevity of messenger RNA: A mutant ofEscherichia coli with altered mRNA stability

21 January 2018

1 reference

CSP41, a sequence-specific chloroplast mRNA binding protein, is an endoribonuclease

21 January 2018

1 reference

CSP41a, a multifunctional RNA-binding protein, initiates mRNA turnover in tobacco chloroplasts

21 January 2018

1 reference

Chloroplast endoribonuclease p54 involved in RNA 3'-end processing is regulated by phosphorylation and redox state.

21 January 2018

1 reference

The Escherichia coli pcnB gene promotes adenylylation of antisense RNAI of ColE1-type plasmids in vivo and degradation of RNAI decay intermediates

21 January 2018

1 reference

Polynucleotide phosphorylase functions both as a 3' right-arrow 5' exonuclease and a poly(A) polymerase in Escherichia coli

21 January 2018

1 reference

Polyadenylation in Arabidopsis and Chlamydomonas organelles: the input of nucleotidyltransferases, poly(A) polymerases and polynucleotide phosphorylase.

21 January 2018

1 reference

Oligoribonuclease is an essential component of the mRNA decay pathway

21 January 2018

1 reference

RNase II removes the oligo(A) tails that destabilize the rpsO mRNA of Escherichia coli

21 January 2018

1 reference

5' to 3' exoribonucleolytic activity is a normal component of chloroplast mRNA decay pathways

21 January 2018

1 reference

In vivo evidence for 5'-->3' exoribonuclease degradation of an unstable chloroplast mRNA.

21 January 2018

1 reference

Chloroplast protein targeting involves localized translation in Chlamydomonas

21 January 2018

1 reference

Periodic variations in the ratio of free to thylakoid-bound chloroplast ribosomes during the cell cycle of Chlamydomonas reinhardtii

21 January 2018

1 reference

Nucleoid-enriched proteomes in developing plastids and chloroplasts from maize leaves: a new conceptual framework for nucleoid functions.

21 January 2018

1 reference

Ribonuclease activity of rat liver perchloric acid-soluble protein, a potent inhibitor of protein synthesis

21 January 2018

1 reference

How do endosymbionts become organelles? Understanding early events in plastid evolution

21 January 2018

1 reference

A hypothesis on the identification of the editing enzyme in plant organelles

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1002/WRNA.1161

1 reference

28 August 2017

1 reference