(Q38415568)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25725218%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

title

Critical assessment of genome-scale metabolic networks: the need for a unified standard (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25725218%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

1 reference

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25725218%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

Aarthi Ravikrishnan

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25725218%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

author name string

Aarthi Ravikrishnan

series ordinal

1

1 reference

2 September 2017

publication date

28 February 2015

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25725218%20AND%20SRC:MED&resulttype=core&format=json

Briefings in Bioinformatics

1 March 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25725218%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

volume

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25725218%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

issue

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25725218%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

page(s)

1057-1068

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25725218%20AND%20SRC:MED&resulttype=core&format=json

Reconstruction of biochemical networks in microorganisms

1 March 2020

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Interpreting expression data with metabolic flux models: predicting Mycobacterium tuberculosis mycolic acid production

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Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments

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Stoichiometric capacitance reveals the theoretical capabilities of metabolic networks

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21 January 2018

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21 January 2018

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21 January 2018

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Using metabolic flux data to further constrain the metabolic solution space and predict internal flux patterns: the Escherichia coli spectrum

21 January 2018

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Synergy between (13)C-metabolic flux analysis and flux balance analysis for understanding metabolic adaptation to anaerobiosis in E. coli.

21 January 2018

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Genome-scale models of microbial cells: evaluating the consequences of constraints

21 January 2018

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What is flux balance analysis?

21 January 2018

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Flux balance analysis of biological systems: applications and challenges.

21 January 2018

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Analysis of optimality in natural and perturbed metabolic networks

21 January 2018

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Regulatory on/off minimization of metabolic flux changes after genetic perturbations

21 January 2018

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Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methods

21 January 2018

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The RAVEN toolbox and its use for generating a genome-scale metabolic model for Penicillium chrysogenum

21 January 2018

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OptFlux: an open-source software platform for in silico metabolic engineering

21 January 2018

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Software applications for flux balance analysis

21 January 2018

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Software applications toward quantitative metabolic flux analysis and modeling

21 January 2018

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KEGGtranslator: visualizing and converting the KEGG PATHWAY database to various formats

21 January 2018

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rBioNet: A COBRA toolbox extension for reconstructing high-quality biochemical networks.

21 January 2018

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Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology

21 January 2018

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High-throughput generation, optimization and analysis of genome-scale metabolic models

21 January 2018

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FAME, the Flux Analysis and Modeling Environment

21 January 2018

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MicrobesFlux: a web platform for drafting metabolic models from the KEGG database

21 January 2018

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Optimizing genome-scale network reconstructions

21 January 2018

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Flux balance analysis of cyanobacterial metabolism: the metabolic network of Synechocystis sp. PCC 6803.

21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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Genome-scale reconstruction and analysis of the Pseudomonas putida KT2440 metabolic network facilitates applications in biotechnology

21 January 2018

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21 January 2018

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Constraint-based modeling of carbon fixation and the energetics of electron transfer in Geobacter metallireducens

21 January 2018

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21 January 2018

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Mapping global effects of the anti-sigma factor MucA in Pseudomonas fluorescens SBW25 through genome-scale metabolic modeling

21 January 2018

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21 January 2018

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21 January 2018

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Reconstruction and analysis of a genome-scale metabolic model for Scheffersomyces stipitis.

21 January 2018

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Genome-scale metabolic reconstructions of Pichia stipitis and Pichia pastoris and in silico evaluation of their potentials

21 January 2018

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21 January 2018

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The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013

21 January 2018

1 reference

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Comparative evaluation of open source software for mapping between metabolite identifiers in metabolic network reconstructions: application to Recon 2

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV003

Detection of stoichiometric inconsistencies in biomolecular models.

21 January 2018

1 reference

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MetRxn: a knowledgebase of metabolites and reactions spanning metabolic models and databases

21 January 2018

1 reference

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Reconstruction of a high-quality metabolic model enables the identification of gene overexpression targets for enhanced antibiotic production in Streptomyces coelicolor A3(2).

21 January 2018

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BRENDA, the enzyme database: updates and major new developments

21 January 2018

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ExPASy: The proteomics server for in-depth protein knowledge and analysis

21 January 2018

1 reference

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The Universal Protein Resource (UniProt): an expanding universe of protein information

21 January 2018

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The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003

21 January 2018

1 reference

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Iterative reconstruction of a global metabolic model of Acinetobacter baylyi ADP1 using high-throughput growth phenotype and gene essentiality data

21 January 2018

1 reference

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Large-scale evaluation of in silico gene deletions in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV003

The biomass objective function

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV003

Drug off-target effects predicted using structural analysis in the context of a metabolic network model

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV003

Metabolic functions of duplicate genes in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV003

Elimination of thermodynamically infeasible loops in steady-state metabolic models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV003

Constraints-based models: regulation of gene expression reduces the steady-state solution space

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV003

Probabilistic integrative modeling of genome-scale metabolic and regulatory networks in Escherichia coli and Mycobacterium tuberculosis.

21 January 2018

1 reference

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Functional integration of a metabolic network model and expression data without arbitrary thresholding.

21 January 2018

1 reference

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Shrinking the metabolic solution space using experimental datasets

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV003

Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV003

Genome-scale metabolic network analysis of the opportunistic pathogen Pseudomonas aeruginosa PAO1

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV003

Flux coupling analysis of genome-scale metabolic network reconstructions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV003

MetaNetX.org: a website and repository for accessing, analysing and manipulating metabolic networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV003

Interrogation of global mutagenesis data with a genome scale model of Neisseria meningitidis to assess gene fitness in vitro and in sera

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV003

Improving the reuse of computational models through version control

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV003

Yeast 5 – an expanded reconstruction of the Saccharomyces cerevisiae metabolic network

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV003

Reconstruction annotation jamborees: a community approach to systems biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV003

MetaMerge: scaling up genome-scale metabolic reconstructions, with application to Mycobacterium tuberculosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV003

Path2Models: large-scale generation of computational models from biochemical pathway maps

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV003

Minimum information requested in the annotation of biochemical models (MIRIAM)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV003

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBV003

21 January 2018

Identifiers

DOI

10.1093/BIB/BBV003

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25725218%20AND%20SRC:MED&resulttype=core&format=json

journals/bib/RavikrishnanR15

1 March 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference