(Q38578607)

4 September 2017

title

Genome architecture: from linear organisation of chromatin to the 3D assembly in the nucleus (English)

1 reference

4 September 2017

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26330112%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

author name string

Joana Sequeira-Mendes

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26330112%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

publication date

2 September 2015

1 reference

4 September 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26330112%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

volume

125

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26330112%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

issue

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26330112%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

page(s)

455-469

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26330112%20AND%20SRC:MED&resulttype=core&format=json

Regulation of chromatin by histone modifications

1 June 2020

cites work

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Polycomb-dependent regulatory contacts between distant Hox loci in Drosophila.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

High-resolution profiling of histone methylations in the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Large-scale chromatin organization: the good, the surprising, and the still perplexing

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

High-resolution statistical mapping reveals gene territories in live yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Discovering and mapping chromatin states using a tree hidden Markov model

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

The chromatin landscape of Drosophila: comparisons between species, sexes, and chromosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Modification of enhancer chromatin: what, how, and why?

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Polycomb silencing: from linear chromatin domains to 3D chromosome folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Citrullination regulates pluripotency and histone H1 binding to chromatin

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

A gene loop containing the floral repressor FLC is disrupted in the early phase of vernalization

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Physical and functional association of SU(VAR)3-9 and HDAC1 in Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

A decade of 3C technologies: insights into nuclear organization

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Capturing chromosome conformation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

The genomic landscape of cohesin-associated chromatin interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Topological domains in mammalian genomes identified by analysis of chromatin interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Control of cell identity genes occurs in insulated neighborhoods in mammalian chromosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

A three-dimensional model of the yeast genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Discovery and characterization of chromatin states for systematic annotation of the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

ChromHMM: automating chromatin-state discovery and characterization

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Interplay between chromatin state, regulator binding, and regulatory motifs in six human cell types

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Mapping and analysis of chromatin state dynamics in nine human cell types

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Epigenetic modifications in plants: an evolutionary perspective

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Genome-wide Hi-C analyses in wild-type and mutants reveal high-resolution chromatin interactions in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Systematic protein location mapping reveals five principal chromatin types in Drosophila cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Heterochromatin proteins and the control of heterochromatic gene silencing in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

An oestrogen-receptor-α-bound human chromatin interactome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Characterization of chromosomal architecture in Arabidopsis by chromosome conformation capture

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Hi-C analysis in Arabidopsis identifies the KNOT, a structure with similarities to the flamenco locus of Drosophila.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Partitioning the C. elegans genome by nucleosome modification, occupancy, and positioning

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Histone modifications and a choice of variant: a language that helps the genome express itself

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Quantitative analysis of chromosome conformation capture assays (3C-qPCR).

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

CTCF-mediated functional chromatin interactome in pluripotent cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Histone H1 and its isoforms: contribution to chromatin structure and function

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Histone modification: cause or cog?

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Comparative analysis of metazoan chromatin organization

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

ChromaSig: a probabilistic approach to finding common chromatin signatures in the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Loss of silent-chromatin looping and impaired imprinting of DLX5 in Rett syndrome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Interplay between two epigenetic marks. DNA methylation and histone H3 lysine 9 methylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Comprehensive analysis of the chromatin landscape in Drosophila melanogaster

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Chromatin modifications and their function

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Epigenetic domains found in mouse embryonic stem cells via a hidden Markov model

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Single-nucleosome mapping of histone modifications in S. cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Broad chromosomal domains of histone modification patterns in C. elegans

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Chromatin binding of SRp20 and ASF/SF2 and dissociation from mitotic chromosomes is modulated by histone H3 serine 10 phosphorylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Studying physical chromatin interactions in plants using Chromosome Conformation Capture (3C).

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Every amino acid matters: essential contributions of histone variants to mammalian development and disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Heritable individual-specific and allele-specific chromatin signatures in humans

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

MORC family ATPases required for heterochromatin condensation and gene silencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Single-cell Hi-C reveals cell-to-cell variability in chromosome structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Spatial partitioning of the regulatory landscape of the X-inactivation centre

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Heterochromatin protein 1 (HP1a) positively regulates euchromatic gene expression through RNA transcript association and interaction with hnRNPs in Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Three-dimensional genome architecture: players and mechanisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

The replication domain model: regulating replicon firing in the context of large-scale chromosome architecture

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Plasticity in patterns of histone modifications and chromosomal proteins in Drosophila heterochromatin

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Integrative analysis of 111 reference human epigenomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Integrative epigenomic mapping defines four main chromatin states in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Histone H3 lysine 9 trimethylation and HP1γ favor inclusion of alternative exons.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

The long-range interaction landscape of gene promoters

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

The Functional Topography of the Arabidopsis Genome Is Organized in a Reduced Number of Linear Motifs of Chromatin States

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Three-dimensional folding and functional organization principles of the Drosophila genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Arabidopsis replacement histone variant H3.3 occupies promoters of regulated genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C).

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Obesity-associated variants within FTO form long-range functional connections with IRX3

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Transcription factors: from enhancer binding to developmental control

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

CTCF mediates long-range chromatin looping and local histone modification in the beta-globin locus

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

The inactive X chromosome adopts a unique three-dimensional conformation that is dependent on Xist RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Genome-wide analysis of histone H3.1 and H3.3 variants in Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Patterns of gene action in plant development revealed by enhancer trap and gene trap transposable elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Depletion of the chromatin looping proteins CTCF and cohesin causes chromatin compaction: insight into chromatin folding by polymer modelling

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Interactions among Polycomb domains are guided by chromosome architecture

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

ChIP-seq accurately predicts tissue-specific activity of enhancers

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Genome-wide analysis of local chromatin packing in Arabidopsis thaliana.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Spatial genome organization: contrasting views from chromosome conformation capture and fluorescence in situ hybridization

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Dynamic deposition of histone variant H3.3 accompanies developmental remodeling of the Arabidopsis transcriptome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Spatial organization of the mouse genome and its role in recurrent chromosomal translocations

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Genome-wide profiling of histone H3 lysine 9 acetylation and dimethylation in Arabidopsis reveals correlation between multiple histone marks and gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Distinct modes of DNA accessibility in plant chromatin

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00412-015-0538-5

Enhancer sequences from Arabidopsis thaliana obtained by library transformation of Nicotiana tabacum

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26330112