(Q42005996)

English

A complex of Cas proteins 5, 6, and 7 is required for the biogenesis and stability of clustered regularly interspaced short palindromic repeats (crispr)-derived rnas (crrnas) in Haloferax volcanii

scientific article published on 23 January 2014

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6 March 2020

A complex of Cas proteins 5, 6, and 7 is required for the biogenesis and stability of clustered regularly interspaced short palindromic repeats (crispr)-derived rnas (crrnas) in Haloferax volcanii (English)

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6 March 2020

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Haloferax volcanii

object named as

Haloferax volcanii

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Ruth Schmitz-Streit

10

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6 March 2020

11

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6 March 2020

Thorsten Allers

12

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6 March 2020

14

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6 March 2020

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Jutta Brendel

1

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6 March 2020

Britta Stoll

2

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6 March 2020

Sita J Lange

3

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6 March 2020

Kundan Sharma

4

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6 March 2020

Christof Lenz

5

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Aris-Edda Stachler

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6 March 2020

Lisa-Katharina Maier

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6 March 2020

Hagen Richter

8

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6 March 2020

Lisa Nickel

9

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6 March 2020

Henning Urlaub

13

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6 March 2020

Anita Marchfelder

15

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23 January 2014

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6 March 2020

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14

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Journal of Biological Chemistry

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6 March 2020

289

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6 March 2020

10

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6 March 2020

7164-7177

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6 March 2020

describes a project that uses

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11 June 2022

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based on heuristic

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Type I-E CRISPR-cas systems discriminate target from non-target DNA through base pairing-independent PAM recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

CRISPRmap: an automated classification of repeat conservation in prokaryotic adaptive immune systems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

Structure of the archaeal Cascade subunit Csa5

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

CRISPR interference: a structural perspective

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

Two CRISPR-Cas systems in Methanosarcina mazei strain Gö1 display common processing features despite belonging to different types I and III.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

Essential requirements for the detection and degradation of invaders by the Haloferax volcanii CRISPR/Cas system I-B.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

The tracrRNA and Cas9 families of type II CRISPR-Cas immunity systems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

Structure of a dimeric crenarchaeal Cas6 enzyme with an atypical active site for CRISPR RNA processing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

Recognition and Cleavage of a Nonstructured CRISPR RNA by Its Processing Endoribonuclease Cas6

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

CRISPR-Cas systems in the cyanobacterium Synechocystis sp. PCC6803 exhibit distinct processing pathways involving at least two Cas6 and a Cmr2 protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

Characterization of CRISPR RNA biogenesis and Cas6 cleavage-mediated inhibition of a provirus in the haloarchaeon Haloferax mediterranei

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

Cas5d processes pre-crRNA and is a member of a larger family of CRISPR RNA endonucleases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

Native tandem and ion mobility mass spectrometry highlight structural and modular similarities in clustered-regularly-interspaced shot-palindromic-repeats (CRISPR)-associated protein complexes from Escherichia coli and Pseudomonas aeruginosa

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

Characterization of CRISPR RNA processing in Clostridium thermocellum and Methanococcus maripaludis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

Cas5d Protein Processes Pre-crRNA and Assembles into a Cascade-like Interference Complex in Subtype I-C/Dvulg CRISPR-Cas System

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

RNA processing in the minimal organism Nanoarchaeum equitans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

An archaeal immune system can detect multiple protospacer adjacent motifs (PAMs) to target invader DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

Small RNAs for defence and regulation in archaea

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

Genetic and Biochemical Identification of a Novel Single-Stranded DNA-Binding Complex in Haloferax volcanii.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

Mechanism of Foreign DNA Selection in a Bacterial Adaptive Immune System

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

CRISPR immunity relies on the consecutive binding and degradation of negatively supercoiled invader DNA by Cascade and Cas3

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

A genome-wide view of the expression and processing patterns of Thermus thermophilus HB8 CRISPR RNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

Mechanism of substrate selection by a highly specific CRISPR endoribonuclease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

RNA-guided genetic silencing systems in bacteria and archaea

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

The impact of CRISPR repeat sequence on structures of a Cas6 protein-RNA complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

Mature clustered, regularly interspaced, short palindromic repeats RNA (crRNA) length is measured by a ruler mechanism anchored at the precursor processing site

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

CRISPR-Cas systems in bacteria and archaea: versatile small RNAs for adaptive defense and regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

Archaeal CRISPR-based immune systems: exchangeable functional modules

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

Structures of the RNA-guided surveillance complex from a bacterial immune system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

Global quantification of mammalian gene expression control

1 reference

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5 June 2018

Recognition and maturation of effector RNAs in a CRISPR interference pathway

1 reference

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5 June 2018

An RNA-induced conformational change required for CRISPR RNA cleavage by the endoribonuclease Cse3

1 reference

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5 June 2018

Evolution and classification of the CRISPR-Cas systems

1 reference

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5 June 2018

RNA-guided complex from a bacterial immune system enhances target recognition through seed sequence interactions

1 reference

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5 June 2018

Structural and Functional Characterization of an Archaeal Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR)-associated Complex for Antiviral Defense (CASCADE)

1 reference

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5 June 2018

Structural basis for CRISPR RNA-guided DNA recognition by Cascade

1 reference

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5 June 2018

Cas3 is a single-stranded DNA nuclease and ATP-dependent helicase in the CRISPR/Cas immune system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

Interaction of the Cas6 Riboendonuclease with CRISPR RNAs: Recognition and Cleavage

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

Clustered regularly interspaced short palindromic repeats (CRISPRs): the hallmark of an ingenious antiviral defense mechanism in prokaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

Dynamic properties of the Sulfolobus CRISPR/Cas and CRISPR/Cmr systems when challenged with vector-borne viral and plasmid genes and protospacers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

Binding and cleavage of CRISPR RNA by Cas6

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

Sequence- and Structure-Specific RNA Processing by a CRISPR Endonuclease

1 reference

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5 June 2018

The archaeal Lsm protein binds to small RNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

Improved strains and plasmid vectors for conditional overexpression of His-tagged proteins in Haloferax volcanii

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

Biocomputational prediction of non-coding RNAs in model cyanobacteria

1 reference

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5 June 2018

Protein structure prediction on the Web: a case study using the Phyre server

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3945376

5 June 2018

Small CRISPR RNAs guide antiviral defense in prokaryotes

1 reference

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5 June 2018

Genome information management and integrated data analysis with HaloLex.

1 reference

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5 June 2018

Evolutionary conservation of sequence and secondary structures in CRISPR repeats

1 reference

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5 June 2018

CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes

1 reference

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5 June 2018

A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes

1 reference

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5 June 2018

Development of additional selectable markers for the halophilic archaeon Haloferax volcanii based on the leuB and trpA genes

1 reference

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5 June 2018

Mass Spectrometric Sequencing of Proteins from Silver-Stained Polyacrylamide Gels

1 reference

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5 June 2018

A general method applicable to the search for similarities in the amino acid sequence of two proteins

1 reference

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5 June 2018

Transformation of the archaebacterium Halobacterium volcanii with genomic DNA.

1 reference

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5 June 2018

The immune system of halophilic archaea.

1 reference

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17 August 2018

The ring of confidence: a haloarchaeal CRISPR/Cas system.

1 reference

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17 August 2018

Biofilm formation by haloarchaea

1 reference

https://pubmed.ncbi.nlm.nih.gov/24459147

12 December 2020

based on heuristic

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Identifiers

10.1074/JBC.M113.508184

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24459147%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

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1 reference

Europe PubMed Central

PMC publication ID

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6 March 2020

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Europe PubMed Central

PMC publication ID

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6 March 2020

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