(Q52649017)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29553575%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

title

Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29553575%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

0 references

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29553575%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

Rekha Seshadri

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29553575%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

Georgios A. Pavlopoulos

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29553575%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

David Paez-Espino

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29553575%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

Gemma Henderson

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29553575%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

Christopher J. Creevey

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29553575%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

Nicolas Terrapon

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29553575%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

Elodie Drula

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29553575%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

Nikos C. Kyrpides

21

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29553575%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

Bernard Henrissat

22

1 reference

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20 March 2020

Tanja Woyke

23

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29553575%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

William J Kelly

25

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29553575%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

19

Vincent Lombard

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29553575%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

Emiley A Eloe-Fadrosh

7

object named as

Emiley A Eloe-Fadrosh

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29553575%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

24

Natalia N Ivanova

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29553575%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

20

Edward Rubin

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29553575%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

10

Neha J Varghese

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29553575%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

9

Michalis Hadjithomas

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29553575%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

author name string

Graeme T Attwood

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29553575%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

Koon Hoong Teh

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29553575%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

Suzanne C Lambie

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29553575%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

Adrian L Cookson

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29553575%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

Hungate1000 project collaborators

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29553575%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

Rechelle Perry

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29553575%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

Pascal Lapebie

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29553575%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

publication date

19 March 2018

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29553575%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29553575%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

volume

36

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29553575%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

issue

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29553575%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

page(s)

359-367

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29553575%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

20 March 2020

copyright license

start time

19 March 2018

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

exact match

https://scigraph.springernature.com/pub.10.1038/nbt.4110

0 references

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Heritable Bovine Rumen Bacteria Are Phylogenetically Related and Correlated with the Cow's Capacity To Harvest Energy from Its Feed

4 October 2018

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4 October 2018

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4 October 2018

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4 October 2018

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Cellulosomes: bacterial nanomachines for dismantling plant polysaccharides

4 October 2018

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An integrated metagenomics pipeline for strain profiling reveals novel patterns of bacterial transmission and biogeography

4 October 2018

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4 October 2018

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Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements

4 October 2018

1 reference

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Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation

4 October 2018

1 reference

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IMG/M: integrated genome and metagenome comparative data analysis system

4 October 2018

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The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota

4 October 2018

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Uncovering Earth’s virome

4 October 2018

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4 October 2018

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Microbiome Data Science: Understanding Our Microbial Planet

4 October 2018

1 reference

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Reducing emissions from agriculture to meet the 2 °C target

4 October 2018

1 reference

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Toward a Predictive Understanding of Earth's Microbiomes to Address 21st Century Challenges

4 October 2018

1 reference

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Culturing of 'unculturable' human microbiota reveals novel taxa and extensive sporulation.

4 October 2018

1 reference

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Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

4 October 2018

1 reference

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4 October 2018

Evolution by gene loss.

1 reference

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The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)

4 October 2018

1 reference

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Early-branching gut fungi possess a large, comprehensive array of biomass-degrading enzymes

4 October 2018

1 reference

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Bovine Host Genetic Variation Influences Rumen Microbial Methane Production with Best Selection Criterion for Low Methane Emitting and Efficiently Feed Converting Hosts Based on Metagenomic Gene Abundance

4 October 2018

1 reference

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Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs

4 October 2018

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Computational approaches to predict bacteriophage-host relationships.

4 October 2018

1 reference

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A Meta-analysis of Bacterial Diversity in the Feces of Cattle

4 October 2018

1 reference

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Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range

4 October 2018

1 reference

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Toward a standard in structural genome annotation for prokaryotes

4 October 2018

1 reference

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Sporulation in Bacteria: Beyond the Standard Model

4 October 2018

1 reference

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Vitamin B12 in meat and dairy products

4 October 2018

1 reference

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RUMINANT NUTRITION SYMPOSIUM: How to use data on the rumen microbiome to improve our understanding of ruminant nutrition

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

RUMINANT NUTRITION SYMPOSIUM: Use of genomics and transcriptomics to identify strategies to lower ruminal methanogenesis.

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

antiSMASH 3.0-a comprehensive resource for the genome mining of biosynthetic gene clusters

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

Prepartum and postpartum rumen fluid microbiomes: characterization and correlation with production traits in dairy cows

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

Vitamin B12 as a modulator of gut microbial ecology

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

Determining the culturability of the rumen bacterial microbiome

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

Invited review: Enteric methane in dairy cattle production: quantifying the opportunities and impact of reducing emissions

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

Agriculture: Steps to sustainable livestock.

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

PhyloSift: phylogenetic analysis of genomes and metagenomes

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

Biomass use, production, feed efficiencies, and greenhouse gas emissions from global livestock systems

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

Ribosomal Database Project: data and tools for high throughput rRNA analysis

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

The carbohydrate-active enzymes database (CAZy) in 2013

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

Metagenomics of rumen bacteriophage from thirteen lactating dairy cattle

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

The fast changing landscape of sequencing technologies and their impact on microbial genome assemblies and annotation

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

Rumen microbial (meta)genomics and its application to ruminant production

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

Ultrafast clustering algorithms for metagenomic sequence analysis

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

Composition and similarity of bovine rumen microbiota across individual animals

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

Metagenomic discovery of biomass-degrading genes and genomes from cow rumen

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

Status of the phylogenetic diversity census of ruminal microbiomes.

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

Adaptive seeds tame genomic sequence comparison

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

Gluconeogenesis in dairy cows: the secret of making sweet milk from sour dough.

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

A catalog of reference genomes from the human microbiome

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

FastTree 2--approximately maximum-likelihood trees for large alignments

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

Prodigal: prokaryotic gene recognition and translation initiation site identification

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

Food security: the challenge of feeding 9 billion people

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

Fast and accurate long-read alignment with Burrows-Wheeler transform

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

Genomics. Genome project standards in a new era of sequencing

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

Statistical methods for detecting differentially abundant features in clinical metagenomic samples

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

Real-time DNA sequencing from single polymerase molecules

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

ALLPATHS: de novo assembly of whole-genome shotgun microreads

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

Resistance of rumen bacteria murein to bovine gastric lysozyme

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

The Jalview Java alignment editor

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

Bacterial species of the rumen

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

Mosaic evolution of ruminant stomach lysozyme genes.

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

4 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6118326

Global survey of the bovine salivary proteome: integrating multidimensional prefractionation, targeted, and glycocapture strategies.

4 October 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNBT.4110

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NBT.4110

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29553575%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29553575%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

1 reference