(Q63433322)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

title

Integrative detection and analysis of structural variation in cancer genomes (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

Vishnu Dileep

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

Ye Zhan

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

Darrin V Bann

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

Juan Carlos Rivera-Mulia

19

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

Rajinder K Kaul

22

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

Michael Buckley

23

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

Christina Ernst

27

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

Duncan Odom

29

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

Ross Hardison

32

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

Ferhat Ay

33

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

William S. Noble

34

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

Job Dekker

35

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

David M Gilbert

36

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

Feng Yue

37

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

author name string

Jie Xu

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

Fan Song

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

Victoria T Le

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

Galip Gürkan Yardımcı

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

Abhijit Chakraborty

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

Yanli Wang

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

Royden Clark

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

Lijun Zhang

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

Hongbo Yang

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

Tingting Liu

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

Sriranga Iyyanki

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

Lin An

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

Christopher Pool

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

Takayo Sasaki

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

Hakan Ozadam

20

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

Bryan R Lajoie

21

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

Kristen Lee

24

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

Morgan Diegel

25

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

Dubravka Pezic

26

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

Suzana Hadjur

28

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

John A Stamatoyannopoulos

30

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

James R Broach

31

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

language of work or name

English

0 references

publication date

10 September 2018

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

volume

50

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

issue

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

page(s)

1388-1398

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

https://scigraph.springernature.com/pub.10.1038/s41588-018-0195-8

22 April 2020

exact match

0 references

cites work

A census of human cancer genes

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Hallmarks of Cancer: The Next Generation

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Identification of the transforming EML4-ALK fusion gene in non-small-cell lung cancer

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Anaplastic lymphoma kinase inhibition in non-small-cell lung cancer

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Letter: A new consistent chromosomal abnormality in chronic myelogenous leukaemia identified by quinacrine fluorescence and Giemsa staining

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Hematologic and cytogenetic responses to imatinib mesylate in chronic myelogenous leukemia

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Cancer cytogenetics: methodology revisited

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Pan-cancer patterns of somatic copy number alteration

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Cancer genome sequencing: a review

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Transcriptional consequences of genomic structural aberrations in breast cancer

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Transcriptome sequencing to detect gene fusions in cancer

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

INTEGRATE: gene fusion discovery using whole genome and transcriptome data

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Genome structural variation discovery and genotyping

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Telomerase activation by genomic rearrangements in high-risk neuroblastoma

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Landscape of somatic mutations in 560 breast cancer whole-genome sequences

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Integrative Analysis Reveals the Transcriptional Collaboration between EZH2 and E2F1 in the Regulation of Cancer-Related Gene Expression

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

LUMPY: a probabilistic framework for structural variant discovery.

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

DELLY: structural variant discovery by integrated paired-end and split-read analysis

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Control-FREEC: a tool for assessing copy number and allelic content using next-generation sequencing data

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Chromatin architecture reorganization during stem cell differentiation.

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

The properties of genome conformation and spatial gene interaction and regulation networks of normal and malignant human cell types

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Chromatin interaction analysis reveals changes in small chromosome and telomere clustering between epithelial and breast cancer cells

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

RUNX1 contributes to higher-order chromatin organization and gene regulation in breast cancer cells.

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations.

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Circos: an information aesthetic for comparative genomics

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Three-dimensional genome architecture influences partner selection for chromosomal translocations in human disease

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Organization of the mitotic chromosome

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Nucleome Analysis Reveals Structure-Function Relationships for Colon Cancer

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Hi-C as a tool for precise detection and characterisation of chromosomal rearrangements and copy number variation in human tumours

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

A computational strategy to adjust for copy number in tumor Hi-C data

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Identification of copy number variations and translocations in cancer cells from Hi-C data

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Complete karyotype characterization of the K562 cell line by combined application of G-banding, multiplex-fluorescence in situ hybridization, fluorescence in situ hybridization, and comparative genomic hybridization

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

An aneuploid mouse strain carrying human chromosome 21 with Down syndrome phenotypes

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Massively parallel sequencing reveals the complex structure of an irradiated human chromosome on a mouse background in the Tc1 model of Down syndrome

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

DNA replication timing

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Large-Scale Chromatin Structure-Function Relationships during the Cell Cycle and Development: Insights from Replication Timing.

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Replication-timing boundaries facilitate cell-type and species-specific regulation of a rearranged human chromosome in mouse

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Abnormal developmental control of replication-timing domains in pediatric acute lymphoblastic leukemia

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Topologically associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication-timing program

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Dynamic changes in replication timing and gene expression during lineage specification of human pluripotent stem cells.

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Complex correlations: replication timing and mutational landscapes during cancer and genome evolution

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Genome-wide translocation sequencing reveals mechanisms of chromosome breaks and rearrangements in B cells

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Identification of chromosomal loci associated with non-P-glycoprotein-mediated multidrug resistance to topoisomerase II inhibitor in lung adenocarcinoma cell line by comparative genomic hybridization

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

A combination of molecular cytogenetic analyses reveals complex genetic alterations in conventional renal cell carcinoma

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Modeling of lung cancer by an orthotopically growing H460SM variant cell line reveals novel candidate genes for systemic metastasis

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Genomic instability and histone H3 phosphorylation induction by the Ras-mitogen activated protein kinase pathway in pancreatic cancer cells

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Non-random chromosomal rearrangements in pancreatic cancer cell lines identified by spectral karyotyping

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Differences and homologies of chromosomal alterations within and between breast cancer cell lines: a clustering analysis.

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Comprehensive long-span paired-end-tag mapping reveals characteristic patterns of structural variations in epithelial cancer genomes

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Long-range massively parallel mate pair sequencing detects distinct mutations and similar patterns of structural mutability in two breast cancer cell lines

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Assembly and diploid architecture of an individual human genome via single-molecule technologies

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

De novo assembly and phasing of a Korean human genome.

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

COSMIC: exploring the world's knowledge of somatic mutations in human cancer

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C.

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Formation of new chromatin domains determines pathogenicity of genomic duplications

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Disruptions of topological chromatin domains cause pathogenic rewiring of gene-enhancer interactions

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Activation of proto-oncogenes by disruption of chromosome neighborhoods.

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Enhancer hijacking activates GFI1 family oncogenes in medulloblastoma

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Pan-cancer analysis of somatic copy-number alterations implicates IRS4 and IGF2 in enhancer hijacking.

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Iterative correction of Hi-C data reveals hallmarks of chromosome organization

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Genome-wide analysis of replication timing by next-generation sequencing with E/L Repli-seq.

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

TopHat-Fusion: an algorithm for discovery of novel fusion transcripts

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Discovering chimeric transcripts in paired-end RNA-seq data by using EricScript

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

A comprehensive transcriptional portrait of human cancer cell lines

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

WASP: allele-specific software for robust molecular quantitative trait locus discovery

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

1 reference

https://api.crossref.org/works/10.1038%2FS41588-018-0195-8

7 January 2021

Identification of a high frequency of chromosomal rearrangements in the centromeric regions of prostate cancer cell lines by sequential Giemsa banding and spectral karyotyping

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/30202056

12 December 2020

inferred from PubMed ID database lookup

Characterization of two human lung adenocarcinoma cell lines by reciprocal chromosome painting

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/30202056

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1038/S41588-018-0195-8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

22 April 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30202056%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

PubMed publication ID

30202056

1 reference