(Q84387320)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20539294%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

title

Combining genetic diversity, informatics and metabolomics to facilitate annotation of plant gene function (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20539294%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

1 reference

0 references

1 reference

2

Alisdair R Fernie

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20539294%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

1

Takayuki Tohge

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20539294%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

publication date

10 June 2010

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20539294%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20539294%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

volume

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20539294%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

issue

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20539294%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

page(s)

1210-1227

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20539294%20AND%20SRC:MED&resulttype=core&format=json

https://scigraph.springernature.com/pub.10.1038/nprot.2010.82

5 February 2020

exact match

0 references

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Identification of a Flavonol 7-O-Rhamnosyltransferase Gene Determining Flavonoid Pattern inArabidopsisby Transcriptome Coexpression Analysis and Reverse Genetics

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Convergent evolution in the BAHD family of acyl transferases: identification and characterization of anthocyanin acyl transferases from Arabidopsis thaliana.

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Differential regulation of closely related R2R3-MYB transcription factors controls flavonol accumulation in different parts of the Arabidopsis thaliana seedling

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A chloroplastic UDP-glucose pyrophosphorylase from Arabidopsis is the committed enzyme for the first step of sulfolipid biosynthesis

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Identification of the SAAT gene involved in strawberry flavor biogenesis by use of DNA microarrays.

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A functional genomics approach toward the understanding of secondary metabolism in plant cells

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Genomics-based selection and functional characterization of triterpene glycosyltransferases from the model legume Medicago truncatula

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Gene-to-metabolite networks for terpenoid indole alkaloid biosynthesis in Catharanthus roseus cells

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Differential gene expression profiles of red and green forms of Perilla frutescens leading to comprehensive identification of anthocyanin biosynthetic genes

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Metabolite analyses of grain from maize hybrids grown in the United States under drought and watered conditions during the 2002 field season.

31 March 2020

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The genetics of plant metabolism

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31 March 2020

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31 March 2020

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31 March 2020

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Metabolomic Screening Applied to Rice FOX Arabidopsis Lines Leads to the Identification of a Gene-Changing Nitrogen Metabolism

31 March 2020

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Adjustment of diurnal starch turnover to short days: depletion of sugar during the night leads to a temporary inhibition of carbohydrate utilization, accumulation of sugars and post-translational activation of ADP-glucose pyrophosphorylase in the fo

31 March 2020

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The critical role of Arabidopsis electron-transfer flavoprotein:ubiquinone oxidoreductase during dark-induced starvation

31 March 2020

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31 March 2020

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The Arabidopsis transcription factor MYB12 is a flavonol-specific regulator of phenylpropanoid biosynthesis

31 March 2020

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The TRANSPARENT TESTA GLABRA1 locus, which regulates trichome differentiation and anthocyanin biosynthesis in Arabidopsis, encodes a WD40 repeat protein.

31 March 2020

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The TT8 gene encodes a basic helix-loop-helix domain protein required for expression of DFR and BAN genes in Arabidopsis siliques

31 March 2020

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Dominant repression of target genes by chimeric repressors that include the EAR motif, a repression domain, in Arabidopsis

31 March 2020

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Activation tagging identifies a conserved MYB regulator of phenylpropanoid biosynthesis.

31 March 2020

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Maize anthocyanin regulatory gene pl is a duplicate of c1 that functions in the plant.

31 March 2020

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Role of the regulatory gene pl in the photocontrol of maize anthocyanin pigmentation.

31 March 2020

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The an11 locus controlling flower pigmentation in petunia encodes a novel WD-repeat protein conserved in yeast, plants, and animals

31 March 2020

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The LAP1 MYB transcription factor orchestrates anthocyanidin biosynthesis and glycosylation in Medicago

31 March 2020

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The grapevine R2R3-MYB transcription factor VvMYBF1 regulates flavonol synthesis in developing grape berries

31 March 2020

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White grapes arose through the mutation of two similar and adjacent regulatory genes

31 March 2020

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The grapevine transcription factor VvMYBPA1 regulates proanthocyanidin synthesis during fruit development

31 March 2020

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MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis

31 March 2020

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The Arabidopsis ATR1 Myb transcription factor controls indolic glucosinolate homeostasis

31 March 2020

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31 March 2020

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HAG2/MYB76 and HAG3/MYB29 exert a specific and coordinated control on the regulation of aliphatic glucosinolate biosynthesis in Arabidopsis thaliana

31 March 2020

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ORCA3, a jasmonate-responsive transcriptional regulator of plant primary and secondary metabolism

31 March 2020

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Identification of a WRKY protein as a transcriptional regulator of benzylisoquinoline alkaloid biosynthesis in Coptis japonica.

31 March 2020

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Zinc finger proteins act as transcriptional repressors of alkaloid biosynthesis genes in Catharanthus roseus.

31 March 2020

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TRANSPARENT TESTA 19 is involved in the accumulation of both anthocyanins and proanthocyanidins in Arabidopsis

31 March 2020

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Molecular identification and physiological characterization of a novel monosaccharide transporter from Arabidopsis involved in vacuolar sugar transport

31 March 2020

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Genetic evidence for three unique components in primary cell-wall cellulose synthase complexes in Arabidopsis

31 March 2020

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Identification and characterization of ADNT1, a novel mitochondrial adenine nucleotide transporter from Arabidopsis

31 March 2020

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Plastidial glyceraldehyde-3-phosphate dehydrogenase deficiency leads to altered root development and affects the sugar and amino acid balance in Arabidopsis

31 March 2020

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Zooming in on a quantitative trait for tomato yield using interspecific introgressions

31 March 2020

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Molecular identification and functional characterization of Arabidopsis thaliana mitochondrial and chloroplastic NAD+ carrier proteins

31 March 2020

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Gas chromatography mass spectrometry–based metabolite profiling in plants

31 March 2020

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Untargeted large-scale plant metabolomics using liquid chromatography coupled to mass spectrometry

31 March 2020

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1H NMR metabolite fingerprinting and metabolomic analysis of perchloric acid extracts from plant tissues.

31 March 2020

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Simultaneous analysis of metabolites in potato tuber by gas chromatography-mass spectrometry

31 March 2020

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Application of GC-MS for the detection of lipophilic compounds in diverse plant tissues

31 March 2020

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Metabolic profiling of transgenic tomato plants overexpressing hexokinase reveals that the influence of hexose phosphorylation diminishes during fruit development

31 March 2020

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A proposed framework for the description of plant metabolomics experiments and their results

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Quality control for plant metabolomics: reporting MSI-compliant studies

31 March 2020

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Identification of loci affecting flavour volatile emissions in tomato fruits.

31 March 2020

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A plant thiolase involved in benzoic acid biosynthesis and volatile benzenoid production

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Genevestigator. Facilitating web-based gene-expression analysis

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Co-expression tools for plant biology: opportunities for hypothesis generation and caveats

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Regulation of metabolic networks: understanding metabolic complexity in the systems biology era.

31 March 2020

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Getting to grips with the plant metabolic network

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Profiling of Arabidopsis secondary metabolites by capillary liquid chromatography coupled to electrospray ionization quadrupole time-of-flight mass spectrometry

31 March 2020

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Kinetics of labelling of organic and amino acids in potato tubers by gas chromatography-mass spectrometry following incubation in (13)C labelled isotopes

31 March 2020

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XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification

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XCMS2: processing tandem mass spectrometry data for metabolite identification and structural characterization

31 March 2020

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Processing methods for differential analysis of LC/MS profile data

31 March 2020

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TagFinder for the quantitative analysis of gas chromatography--mass spectrometry (GC-MS)-based metabolite profiling experiments.

31 March 2020

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Transcriptional coordination of the metabolic network in Arabidopsis.

31 March 2020

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Approaches for extracting practical information from gene co-expression networks in plant biology

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Decoding genes with coexpression networks and metabolomics - 'majority report by precogs'.

31 March 2020

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Clustal W and Clustal X version 2.0

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Mode of inheritance of primary metabolic traits in tomato

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Comprehensive metabolic profiling and phenotyping of interspecific introgression lines for tomato improvement.

31 March 2020

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Metabolomics-oriented isolation and structure elucidation of 37 compounds including two anthocyanins from Arabidopsis thaliana

31 March 2020

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The Botany Array Resource: e-Northerns, Expression Angling, and promoter analyses

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Metabolomics-assisted breeding: a viable option for crop improvement?

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Natural genetic variation for improving crop quality

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Plant breeders go back to nature

31 March 2020

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Sucrose-to-Starch Metabolism in Tomato Fruit Undergoing Transient Starch Accumulation.

31 March 2020

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Integration of biological networks and gene expression data using Cytoscape

31 March 2020

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METLIN: a metabolite mass spectral database

31 March 2020

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GMD@CSB.DB: the Golm Metabolome Database

31 March 2020

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Explanatory signal interpretation and metabolite identification strategies for nominal mass FIE-MS metabolite fingerprints

31 March 2020

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A liquid chromatography-mass spectrometry-based metabolome database for tomato

31 March 2020

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Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis

31 March 2020

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Distinctive features of plant organs characterized by global analysis of gene expression in Arabidopsis

31 March 2020

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CSB.DB: a comprehensive systems-biology database

31 March 2020

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KAGIANA: an excel-based tool for retrieving summary information on Arabidopsis genes

31 March 2020

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CressExpress: a tool for large-scale mining of expression data from Arabidopsis

31 March 2020

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GeneCAT--novel webtools that combine BLAST and co-expression analyses.

31 March 2020

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ATTED-II provides coexpressed gene networks for Arabidopsis

31 March 2020

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RiceArrayNet: a database for correlating gene expression from transcriptome profiling, and its application to the analysis of coexpressed genes in rice

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Refinement of light-responsive transcript lists using rice oligonucleotide arrays: evaluation of gene-redundancy

31 March 2020

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The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses.

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A high-resolution root spatiotemporal map reveals dominant expression patterns.

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Tomato Expression Database (TED): a suite of data presentation and analysis tools

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2010.82

Construction, visualisation, and clustering of transcription networks from microarray expression data

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2010.82

Network visualization and analysis of gene expression data using BioLayout Express(3D).

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2010.82

Identification of heterotic metabolite QTL inArabidopsis thalianaRIL and IL populations

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2010.82

Genetic association mapping and genome organization of maize

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2010.82

PRIMe: a Web site that assembles tools for metabolomics and transcriptomics.

31 March 2020

1 reference

12 December 2020

1 reference

12 December 2020

Combined transcript and metabolite profiling of Arabidopsis grown under widely variant growth conditions facilitates the identification of novel metabolite-mediated regulation of gene expression

1 reference

12 December 2020

The Arabidopsis TT2 gene encodes an R2R3 MYB domain protein that acts as a key determinant for proanthocyanidin accumulation in developing seed.

1 reference

12 December 2020

The AtGenExpress hormone and chemical treatment data set: experimental design, data evaluation, model data analysis and data access

1 reference

12 December 2020

Metabolite profiling in Arabidopsis

1 reference

12 December 2020