(Q88125469)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30544263%20AND%20SRC:MED&resulttype=core&format=json

14 April 2020

title

Unexpected diversity in eukaryotic transcription revealed by the retrotransposon hotspot family of Trypanosoma brucei (English)

1 reference

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14 April 2020

Trypanosoma brucei

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1

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14 April 2020

author name string

Arunasalam Naguleswaran

2

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14 April 2020

Walid H Gharib

3

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14 April 2020

Frédéric Bringaud

4

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14 April 2020

Isabel Roditi

5

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14 April 2020

language of work or name

English

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publication date

1 February 2019

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14 April 2020

published in

Nucleic Acids Research

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14 April 2020

volume

47

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14 April 2020

issue

4

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14 April 2020

page(s)

1725-1739

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Creative Commons Attribution-NonCommercial 4.0 International

14 April 2020

copyright license

start time

14 December 2018

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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describes a project that uses

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10 June 2022

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&rettype=xml&id=6393297

cites work

Cultivation and in vitro cloning or procyclic culture forms of Trypanosoma brucei in a semi-defined medium. Short communication

1 reference

12 December 2020

First tsetse fly transmission of the "AnTat" serodeme of Trypanosoma brucei

1 reference

12 December 2020

Single-Step Method of RNA Isolation by Acid Guanidinium Thiocyanate–Phenol–Chloroform Extraction

1 reference

12 December 2020

Messenger RNA synthesis in mammalian cells is catalyzed by the phosphorylated form of RNA polymerase II

1 reference

12 December 2020

Trypanosoma brucei repeated element with unusual structural and transcriptional properties

1 reference

12 December 2020

Expression of a polypeptide containing a dipeptide repeat is confined to the insect stage of Trypanosoma brucei

1 reference

12 December 2020

The evolutionary expansion of the trypanosomatid flagellates

1 reference

12 December 2020

A common pyrimidine-rich motif governs trans-splicing and polyadenylation of tubulin polycistronic pre-mRNA in trypanosomes

1 reference

12 December 2020

Accurate polyadenylation of procyclin mRNAs in Trypanosoma brucei is determined by pyrimidine-rich elements in the intergenic regions

1 reference

12 December 2020

Hierarchies of RNA-processing signals in a trypanosome surface antigen mRNA precursor

1 reference

12 December 2020

Operons in C. elegans: polycistronic mRNA precursors are processed by trans-splicing of SL2 to downstream coding regions

1 reference

12 December 2020

Control of polyadenylation and alternative splicing of transcripts from adjacent genes in a procyclin expression site: a dual role for polypyrimidine tracts in trypanosomes?

1 reference

12 December 2020

Temporal order of RNA-processing reactions in trypanosomes: rapid trans splicing precedes polyadenylation of newly synthesized tubulin transcripts

1 reference

12 December 2020

Transcription of the Trypanosoma brucei spliced leader RNA gene is dependent only on the presence of upstream regulatory elements

1 reference

12 December 2020

Gene clusters and polycistronic transcription in eukaryotes.

1 reference

12 December 2020

Transcription-dependent nuclear-cytoplasmic trafficking is required for the function of the von Hippel-Lindau tumor suppressor protein

1 reference

12 December 2020

NELF, a multisubunit complex containing RD, cooperates with DSIF to repress RNA polymerase II elongation

1 reference

12 December 2020

Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription

1 reference

12 December 2020

Trypanosome spliced leader RNA genes contain the first identified RNA polymerase II gene promoter in these organisms

1 reference

12 December 2020

A pol I transcriptional body associated with VSG mono-allelic expression in Trypanosoma brucei

1 reference

12 December 2020

RNA helicase p54 (DDX6) is a shuttling protein involved in nuclear assembly of stored mRNP particles

1 reference

12 December 2020

A new, expressed multigene family containing a hot spot for insertion of retroelements is associated with polymorphic subtelomeric regions of Trypanosoma brucei

1 reference

12 December 2020

Cycloheximide-mediated accumulation of transcripts from a procyclin expression site depends on the intergenic region.

1 reference

12 December 2020

Methylation of histone H3 by Set2 in Saccharomyces cerevisiae is linked to transcriptional elongation by RNA polymerase II

1 reference

12 December 2020

RNA polymerase I transcribes procyclin genes and variant surface glycoprotein gene expression sites in Trypanosoma brucei

1 reference

12 December 2020

A variant histone H3 is enriched at telomeres in Trypanosoma brucei.

1 reference

12 December 2020

Trypanosomes are monophyletic: evidence from genes for glyceraldehyde phosphate dehydrogenase and small subunit ribosomal RNA.

1 reference

12 December 2020

Cold shock and regulation of surface protein trafficking convey sensitization to inducers of stage differentiation in Trypanosoma brucei

1 reference

12 December 2020

Coordination of replication and transcription along a Drosophila chromosome.

1 reference

12 December 2020

The Genome of the African Trypanosome Trypanosoma brucei

1 reference

12 December 2020

The genome of the kinetoplastid parasite, Leishmania major

1 reference

12 December 2020

Characterization of a multisubunit transcription factor complex essential for spliced-leader RNA gene transcription in Trypanosoma brucei

1 reference

12 December 2020

Highly efficient tandem affinity purification of trypanosome protein complexes based on a novel epitope combination

1 reference

12 December 2020

A divergent transcription factor TFIIB in trypanosomes is required for RNA polymerase II-dependent spliced leader RNA transcription and cell viability

1 reference

12 December 2020

A TFIIB-like protein is indispensable for spliced leader RNA gene transcription in Trypanosoma brucei

1 reference

12 December 2020

Characterization of RNA polymerase II subunits of Trypanosoma brucei

1 reference

12 December 2020

Biochemical characterization of Trypanosoma brucei RNA polymerase II

1 reference

12 December 2020

Ubiquitin-associated domain of Mex67 synchronizes recruitment of the mRNA export machinery with transcription

1 reference

12 December 2020

Operon conservation and the evolution of trans-splicing in the phylum Nematoda

1 reference

12 December 2020

The role of chromatin during transcription

1 reference

12 December 2020

Highly efficient stable transformation of bloodstream forms of Trypanosoma brucei.

1 reference

12 December 2020

A quick and quantitative chromatin immunoprecipitation assay for small cell samples.

1 reference

12 December 2020

Recruitment of mRNAs to cytoplasmic ribonucleoprotein granules in trypanosomes

1 reference

12 December 2020

SAGA and a novel Drosophila export complex anchor efficient transcription and mRNA export to NPC.

1 reference

12 December 2020

Drosophila peroxiredoxin 5 is the second gene in a dicistronic operon

1 reference

12 December 2020

Heat shock causes a decrease in polysomes and the appearance of stress granules in trypanosomes independently of eIF2(alpha) phosphorylation at Thr169

1 reference

12 December 2020

Base J: Discovery, Biosynthesis, and Possible Functions

1 reference

12 December 2020

Model-based analysis of ChIP-Seq (MACS)

1 reference

12 December 2020

Four histone variants mark the boundaries of polycistronic transcription units in Trypanosoma brucei

1 reference

12 December 2020

The Sequence Alignment/Map format and SAMtools

1 reference

12 December 2020

The role of deadenylation in the degradation of unstable mRNAs in trypanosomes

1 reference

12 December 2020

1 reference

12 December 2020

The non-canonical CTD of RNAP-II is essential for productive RNA synthesis in Trypanosoma brucei

1 reference

12 December 2020

"Cotranscriptionality": the transcription elongation complex as a nexus for nuclear transactions

1 reference

12 December 2020

Progression through the RNA polymerase II CTD cycle

1 reference

12 December 2020

Analysis and optimization of copper-catalyzed azide-alkyne cycloaddition for bioconjugation

1 reference

12 December 2020

Histone H3 trimethylated at lysine 4 is enriched at probable transcription start sites in Trypanosoma brucei

1 reference

12 December 2020

Transcript Elongation by RNA Polymerase II.

1 reference

12 December 2020

Connecting the transcription site to the nuclear pore: a multi-tether process that regulates gene expression

1 reference

12 December 2020

Spliced leader trapping reveals widespread alternative splicing patterns in the highly dynamic transcriptome of Trypanosoma brucei.

1 reference

12 December 2020

The Transcriptome of the Human Pathogen Trypanosoma brucei at Single-Nucleotide Resolution

1 reference

12 December 2020

An essential nuclear protein in trypanosomes is a component of mRNA transcription/export pathway.

1 reference

12 December 2020

Alba-domain proteins of Trypanosoma brucei are cytoplasmic RNA-binding proteins that interact with the translation machinery

1 reference

12 December 2020

RECQL5 cooperates with Topoisomerase II alpha in DNA decatenation and cell cycle progression

1 reference

12 December 2020

mRNA export and gene expression: the SAGA-TREX-2 connection.

1 reference

12 December 2020

mRNA export and the TREX complex

1 reference

12 December 2020

Proteomic analysis of Trypanosoma cruzi epimastigotes subjected to heat shock.

1 reference

12 December 2020

Identification of ORC1/CDC6-interacting factors in Trypanosoma brucei reveals critical features of origin recognition complex architecture

1 reference

12 December 2020

Depletion of trypanosome CTR9 leads to gene expression defects

1 reference

12 December 2020

CTD tyrosine phosphorylation impairs termination factor recruitment to RNA polymerase II.

1 reference

12 December 2020

DOT1A-dependent H3K76 methylation is required for replication regulation in Trypanosoma brucei

1 reference

12 December 2020

Cell-cycle-regulated control of VSG expression site silencing by histones and histone chaperones ASF1A and CAF-1b in Trypanosoma brucei.

1 reference

12 December 2020

The Spt4-Spt5 complex: a multi-faceted regulator of transcription elongation

1 reference

12 December 2020

Global quantitative SILAC phosphoproteomics reveals differential phosphorylation is widespread between the procyclic and bloodstream form lifecycle stages of Trypanosoma brucei.

1 reference

12 December 2020

The nuclear mRNA export receptor Mex67-Mtr2 of Trypanosoma brucei contains a unique and essential zinc finger motif.

1 reference

12 December 2020

Nucleolar proteins regulate stage-specific gene expression and ribosomal RNA maturation in Trypanosoma brucei.

1 reference

12 December 2020

deepTools: a flexible platform for exploring deep-sequencing data.

1 reference

12 December 2020

RECQL5 controls transcript elongation and suppresses genome instability associated with transcription stress

1 reference

12 December 2020

Networks of gene expression regulation in Trypanosoma brucei.

1 reference

12 December 2020

Identification of a novel nucleocytoplasmic shuttling RNA helicase of trypanosomes

1 reference

12 December 2020

The spliceosomal PRP19 complex of trypanosomes

1 reference

12 December 2020

Nuclear pore proteins and the control of genome functions

1 reference

12 December 2020

Trypanosoma brucei RRM1 is a nuclear RNA-binding protein and modulator of chromatin structure.

1 reference

12 December 2020

Control of mammalian gene expression by selective mRNA export

1 reference

12 December 2020

Unveiling the Trypanosoma cruzi Nuclear Proteome

1 reference

12 December 2020

Molecular biology: Mediating transcription and RNA export.

1 reference

12 December 2020

Gene expression regulatory networks in Trypanosoma brucei: insights into the role of the mRNA-binding proteome.

1 reference

12 December 2020

Base J represses genes at the end of polycistronic gene clusters in Leishmania major by promoting RNAP II termination

1 reference

12 December 2020

Divergence of a conserved elongation factor and transcription regulation in budding and fission yeast

1 reference

12 December 2020

Selective inhibition of RNA polymerase I transcription as a potential approach to treat African trypanosomiasis

1 reference

12 December 2020

RNA Pol II Dynamics Modulate Co-transcriptional Chromatin Modification, CTD Phosphorylation, and Transcriptional Direction.

1 reference

12 December 2020

An essential domain of an early-diverged RNA polymerase II functions to accurately decode a primitive chromatin landscape

1 reference

12 December 2020

GT‐rich promoters can drive RNA pol II transcription and deposition of H2A.Z in African trypanosomes

1 reference

12 December 2020

The proteome and transcriptome of the infectious metacyclic form of Trypanosoma brucei define quiescent cells primed for mammalian invasion.

1 reference

12 December 2020

An RNA polymerase II-associated TFIIF-like complex is indispensable for SL RNA gene transcription in Trypanosoma brucei

1 reference

12 December 2020

RNA-Seq analysis validates the use of culture-derived Trypanosoma brucei and provides new markers for mammalian and insect life-cycle stages.

1 reference

12 December 2020

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update.

1 reference

12 December 2020

Structure of paused transcription complex Pol II-DSIF-NELF

1 reference

12 December 2020

Emerging challenges in understanding trypanosome antigenic variation

1 reference

12 December 2020

Trypanosomes can initiate nuclear export co-transcriptionally

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKY1255

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30544263%20AND%20SRC:MED&resulttype=core&format=json

14 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30544263%20AND%20SRC:MED&resulttype=core&format=json

14 April 2020

PubMed publication ID

30544263

1 reference