(Q94671866)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32405051%20AND%20SRC:MED&resulttype=core&format=json

18 May 2020

title

Reproducible molecular networking of untargeted mass spectrometry data using GNPS (English)

1 reference

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18 May 2020

7

1 reference

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18 May 2020

Fernando Vargas

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32405051%20AND%20SRC:MED&resulttype=core&format=json

18 May 2020

Justin J J van der Hooft

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32405051%20AND%20SRC:MED&resulttype=core&format=json

18 May 2020

Kyo Bin Kang

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32405051%20AND%20SRC:MED&resulttype=core&format=json

Andrés Mauricio Caraballo-Rodriguez

18 May 2020

15

1 reference

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18 May 2020

Kelly Weldon

17

1 reference

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18 May 2020

Samuel Bertrand

18

1 reference

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18 May 2020

Catherine Roullier

19

1 reference

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18 May 2020

Cristopher A Boya P

22

1 reference

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18 May 2020

Randy Mojica-Flores

27

1 reference

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18 May 2020

Nicole Tayler

32

1 reference

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18 May 2020

Fidele Tugizimana

34

1 reference

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18 May 2020

Alexander Aksenov

36

1 reference

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18 May 2020

Alan K Jarmusch

37

1 reference

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18 May 2020

Andrew Truman

39

1 reference

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18 May 2020

Mingxun Wang

41

1 reference

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18 May 2020

Pieter C. Dorrestein

42

1 reference

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18 May 2020

4

Louis-Félix Nothias

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32405051%20AND%20SRC:MED&resulttype=core&format=json

18 May 2020

8

Julia M Gauglitz

1 reference

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18 May 2020

12

Madeleine Ernst

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32405051%20AND%20SRC:MED&resulttype=core&format=json

18 May 2020

40

Nuno Bandeira

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32405051%20AND%20SRC:MED&resulttype=core&format=json

18 May 2020

6

Amina Bouslimani

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32405051%20AND%20SRC:MED&resulttype=core&format=json

18 May 2020

Mélissa Nothias-Esposito

5

object named as

Mélissa Nothias-Esposito

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32405051%20AND%20SRC:MED&resulttype=core&format=json

18 May 2020

3

Kerry L McPhail

1 reference

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18 May 2020

2

Emily C Gentry

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32405051%20AND%20SRC:MED&resulttype=core&format=json

18 May 2020

33

Robert A Keyzers

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32405051%20AND%20SRC:MED&resulttype=core&format=json

18 May 2020

14

Christine M Aceves

1 reference

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18 May 2020

1

Allegra T Aron

1 reference

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18 May 2020

9

Nicole Sikora

1 reference

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18 May 2020

21

Richard M Tehan

1 reference

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18 May 2020

16

Irina Koester

1 reference

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18 May 2020

20

Kunyang Sun

1 reference

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18 May 2020

24

Marcelino Gutiérrez

1 reference

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18 May 2020

25

Aldo Moreno Ulloa

1 reference

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Javier Andres Tejeda Mora

18 May 2020

26

object named as

Javier Andres Tejeda Mora

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32405051%20AND%20SRC:MED&resulttype=core&format=json

18 May 2020

28

Johant Lakey-Beitia

1 reference

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18 May 2020

Victor Vásquez-Chaves

29

object named as

Victor Vásquez-Chaves

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32405051%20AND%20SRC:MED&resulttype=core&format=json

18 May 2020

35

Nombuso Ndlovu

1 reference

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18 May 2020

38

Robin Schmid

1 reference

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18 May 2020

Angela I Calderón

31

0 references

author name string

Martin H Christian

23

1 reference

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18 May 2020

Yilue Zhang

30

1 reference

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18 May 2020

publication date

13 May 2020

1 reference

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18 May 2020

1 reference

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Mass spectral molecular networking of living microbial colonies

18 May 2020

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7 January 2021

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Natural products targeting strategies involving molecular networking: different manners, one goal

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7 January 2021

A joint molecular networking study of a Smenospongia sponge and a cyanobacterial bloom revealed new antiproliferative chlorinated polyketides

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7 January 2021

Molecular Networking Reveals Two Distinct Chemotypes in Pyrroloiminoquinone-Producing Tsitsikamma favus Sponges

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7 January 2021

Application of metabolomics and molecular networking in investigating the chemical profile and antitrypanosomal activity of British bluebells (Hyacinthoides non-scripta)

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7 January 2021

Domain-Targeted Metabolomics Delineates the Heterocycle Assembly Steps of Colibactin Biosynthesis.

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7 January 2021

Comparative metabolomics and structural characterizations illuminate colibactin pathway-dependent small molecules.

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7 January 2021

Indexing the Pseudomonas specialized metabolome enabled the discovery of poaeamide B and the bananamides

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7 January 2021

Clustering millions of tandem mass spectra

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7 January 2021

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

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7 January 2021

Spectral archives: extending spectral libraries to analyze both identified and unidentified spectra

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7 January 2021

A tutorial in small molecule identification via electrospray ionization-mass spectrometry: The practical art of structural elucidation.

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7 January 2021

Metabolomic "Dark Matter" Dependent on Peroxisomal β-Oxidation in Caenorhabditis elegans.

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7 January 2021

Non-detection of honeybee hive contamination following Vespula wasp baiting with protein containing fipronil

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7 January 2021

Correlating chemical diversity with taxonomic distance for discovery of natural products in myxobacteria.

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7 January 2021

Warhead biosynthesis and the origin of structural diversity in hydroxamate metalloproteinase inhibitors.

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7 January 2021

Rhamnellosides A and B, ω-Phenylpentaene Fatty Acid Amide Diglycosides from the Fruits of Rhamnella franguloides.

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7 January 2021

Structurally Diverse Diterpenoids from Sandwithia guyanensis.

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7 January 2021

Structure Annotation and Quantification of Wheat Seed Oxidized Lipids by High-Resolution LC-MS/MS.

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7 January 2021

The secreted metabolome of Streptomyces chartreusis and implications for bacterial chemistry.

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7 January 2021

Unsupervised Discovery and Comparison of Structural Families Across Multiple Samples in Untargeted Metabolomics

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7 January 2021

The benzodiazepine-like natural product tilivalline is produced by the entomopathogenic bacterium Xenorhabdus eapokensis.

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7 January 2021

Critical Assessment of Small Molecule Identification 2016: automated methods

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7 January 2021

Construction of an Ultrahigh Pressure Liquid Chromatography-Tandem Mass Spectral Library of Plant Natural Products and Comparative Spectral Analyses

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7 January 2021

MassBank: a public repository for sharing mass spectral data for life sciences

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7 January 2021

Automatic recalibration and processing of tandem mass spectra using formula annotation

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7 January 2021

Total Synthesis and Biological Assessment of Novel Albicidins Discovered by Mass Spectrometric Networking.

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7 January 2021

The colibactin warhead crosslinks DNA.

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7 January 2021

Deuterium-Labeled Precursor Feeding Reveals a New pABA-Containing Meroterpenoid from the Mango Pathogen Xanthomonas citri pv. mangiferaeindicae.

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7 January 2021

Collected mass spectrometry data on monoterpene indole alkaloids from natural product chemistry research

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7 January 2021

Cytoscape: a software environment for integrated models of biomolecular interaction networks

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7 January 2021

Mass Spectrometry-Based Visualization of Molecules Associated with Human Habitats.

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7 January 2021

Creating a 3D microbial and chemical snapshot of a human habitat.

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7 January 2021

Microbes and associated soluble and volatile chemicals on periodically wet household surfaces

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7 January 2021

Linking Biosynthetic Gene Clusters to their Metabolites via Pathway- Targeted Molecular Networking

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7 January 2021

Mass Spectrometry Uncovers the Role of Surfactin as an Interspecies Recruitment Factor

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7 January 2021

Discovery of novel glycerolated quinazolinones from Streptomyces sp. MBT27

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7 January 2021

Discovery of novel xylosides in co-culture of basidiomycetes Trametes versicolor and Ganoderma applanatum by integrated metabolomics and bioinformatics

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7 January 2021

Intermittent Hypoxia and Hypercapnia, a Hallmark of Obstructive Sleep Apnea, Alters the Gut Microbiome and Metabolome.

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7 January 2021

Seasonal cycling in the gut microbiome of the Hadza hunter-gatherers of Tanzania.

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7 January 2021

American Gut: an Open Platform for Citizen Science Microbiome Research

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7 January 2021

Three-Dimensional Microbiome and Metabolome Cartography of a Diseased Human Lung

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7 January 2021

Metabolic Fingerprints from the Human Oral Microbiome Reveal a Vast Knowledge Gap of Secreted Small Peptidic Molecules

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7 January 2021

Mass Spectrometry-Based Chemical Cartography of a Cardiac Parasitic Infection.

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7 January 2021

Directed Non-targeted Mass Spectrometry and Chemical Networking for Discovery of Eicosanoids and Related Oxylipins

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7 January 2021

Application of a molecular networking approach for clinical and forensic toxicology exemplified in three cases involving 3-MeO-PCP, doxylamine, and chlormequat

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7 January 2021

Assessing Specialized Metabolite Diversity in the Cosmopolitan Plant Genus Euphorbia L

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7 January 2021

Targeted Isolation of Tsitsikammamines from the Antarctic Deep-Sea Sponge Latrunculia biformis by Molecular Networking and Anticancer Activity

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7 January 2021

Meta-mass shift chemical profiling of metabolomes from coral reefs.

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7 January 2021

Natural product diversity associated with the nematode symbionts Photorhabdus and Xenorhabdus

1 reference

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7 January 2021

Bioactivity-Based Molecular Networking for the Discovery of Drug Leads in Natural Product Bioassay-Guided Fractionation.

1 reference

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7 January 2021

Computationally Assisted Discovery and Assignment of a Highly Strained and PANC-1 Selective Alkaloid from Alaska's Deep Ocean

1 reference

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7 January 2021

Discovery of the Tyrobetaine Natural Products and Their Biosynthetic Gene Cluster via Metabologenomics.

1 reference

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7 January 2021

Integrating Molecular Networking and Biological Assays To Target the Isolation of a Cytotoxic Cyclic Octapeptide, Samoamide A, from an American Samoan Marine Cyanobacterium

1 reference

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7 January 2021

Lifestyle chemistries from phones for individual profiling

1 reference

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7 January 2021

CANPA: Computer-Assisted Natural Products Anticipation

1 reference

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7 January 2021

Niche partitioning of a pathogenic microbiome driven by chemical gradients

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7 January 2021

Global chemical analysis of biology by mass spectrometry

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7 January 2021

Advances in computational metabolomics and databases deepen the understanding of metabolisms.

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7 January 2021

Open-access metabolomics databases for natural product research: present capabilities and future potential.

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7 January 2021

MetaboLights--an open-access general-purpose repository for metabolomics studies and associated meta-data

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7 January 2021

Discovering and linking public omics data sets using the Omics Discovery Index.

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7 January 2021

Optimization and testing of mass spectral library search algorithms for compound identification

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7 January 2021

Dereplication, sequencing and identification of peptidic natural products: from genome mining to peptidogenomics to spectral networks

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7 January 2021

Molecular networking as a dereplication strategy

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7 January 2021

Combining Fragment-Ion and Neutral-Loss Matching during Mass Spectral Library Searching: A New General Purpose Algorithm Applicable to Illicit Drug Identification.

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7 January 2021

The multi-functional topa-quinone copper amine oxidases

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7 January 2021

METLIN: A Technology Platform for Identifying Knowns and Unknowns.

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7 January 2021

SOD1 integrates signals from oxygen and glucose to repress respiration

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7 January 2021

Determination of ion structures in structurally related compounds using precursor ion fingerprinting

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7 January 2021

RIKEN tandem mass spectral database (ReSpect) for phytochemicals: A plant-specific MS/MS-based data resource and database

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7 January 2021

XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification

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7 January 2021

XCMS Online: a web-based platform to process untargeted metabolomic data

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7 January 2021

Metabox: A Toolbox for Metabolomic Data Analysis, Interpretation and Integrative Exploration

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7 January 2021

Dereplication of microbial metabolites through database search of mass spectra

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7 January 2021

Dereplication of peptidic natural products through database search of mass spectra

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7 January 2021

Increased diversity of peptidic natural products revealed by modification-tolerant database search of mass spectra.

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7 January 2021

Propagating annotations of molecular networks using in silico fragmentation.

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7 January 2021

Automated genome mining of ribosomal peptide natural products

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7 January 2021

MetGem software for the generation of molecular networks based on t-SNE algorithm

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7 January 2021

Optimized experimental workflow for tandem mass spectrometry molecular networking in metabolomics

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7 January 2021

Improved batch correction in untargeted MS-based metabolomics.

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7 January 2021

Challenges in mass spectrometry based targeted metabolomics

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

Recent advances in sample preparation techniques to overcome difficulties encountered during quantitative analysis of small molecules from biofluids using LC-MS/MS.

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

Current trends and challenges in sample preparation for global metabolomics using liquid chromatography-mass spectrometry.

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

Matrix effects: the Achilles heel of quantitative high-performance liquid chromatography-electrospray-tandem mass spectrometry

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

Ion suppression in mass spectrometry

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

Prioritizing Natural Product Diversity in a Collection of 146 Bacterial Strains Based on Growth and Extraction Protocols

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

Making It Last: Storage Time and Temperature Have Differential Impacts on Metabolite Profiles of Airway Samples from Cystic Fibrosis Patients

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

Impact of storage conditions on metabolite profiles of sputum samples from persons with cystic fibrosis

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

Effects of processing and storage conditions on charged metabolomic profiles in blood

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

Extraction for metabolomics: access to the metabolome.

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

Significance estimation for large scale metabolomics annotations by spectral matching

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

Ion activation methods for tandem mass spectrometry

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

Dansylation of unactivated alcohols for improved mass spectral sensitivity and application to analysis of cytochrome P450 oxidation products in tissue extracts

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

Quantitative Comparison of Tandem Mass Spectra Obtained on Various Instruments.

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

Dealing with the unknown: metabolomics and metabolite atlases

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

Illuminating the dark matter in metabolomics

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

Software Tools and Approaches for Compound Identification of LC-MS/MS Data in Metabolomics

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

MetFrag relaunched: incorporating strategies beyond in silico fragmentation

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

MetFusion: integration of compound identification strategies

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

SIRIUS: decomposing isotope patterns for metabolite identification

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

SIRIUS 4: a rapid tool for turning tandem mass spectra into metabolite structure information

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

Searching molecular structure databases with tandem mass spectra using CSI:FingerID.

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

Hydrogen Rearrangement Rules: Computational MS/MS Fragmentation and Structure Elucidation Using MS-FINDER Software

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

3D molecular cartography using LC-MS facilitated by Optimus and 'ili software.

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

OpenMS: a flexible open-source software platform for mass spectrometry data analysis

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

MZmine 2: modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

The Proteomics Standards Initiative: Fifteen Years of Progress and Future Work.

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

The European Bioinformatics Institute's data resources

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

BLANKA: an Algorithm for Blank Subtraction in Mass Spectrometry of Complex Biological Samples

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

Proposed minimum reporting standards for chemical analysis

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

How close are we to complete annotation of metabolomes?

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

The WEIZMASS spectral library for high-confidence metabolite identification

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

Identifying Small Molecules via High Resolution Mass Spectrometry: Communicating Confidence

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

Fragmentation reactions using electrospray ionization mass spectrometry: an important tool for the structural elucidation and characterization of synthetic and natural products.

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

Topic modeling for untargeted substructure exploration in metabolomics

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

Biological network exploration with Cytoscape 3

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

Cytoscape 2.8: new features for data integration and network visualization

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

Evaluation of data-dependent versus targeted shotgun proteomic approaches for monitoring transcription factor expression in breast cancer

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

Dereplication strategies in natural product research: How many tools and methodologies behind the same concept?

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

Proposed Confidence Scale and ID Score in the Identification of Known-Unknown Compounds Using High Resolution MS Data

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

1 reference

7 January 2021

Tandem mass spectrometry

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

EMPeror: a tool for visualizing high-throughput microbial community data

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

Mass spectrometry searches using MASST

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

MZmine 2 Data-Preprocessing To Enhance Molecular Networking Reliability.

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

Quantitative molecular networking to profile marine cyanobacterial metabolomes

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

MS-DIAL: data-independent MS/MS deconvolution for comprehensive metabolome analysis

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

The mzIdentML data standard for mass spectrometry-based proteomics results

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

The mzTab data exchange format: communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audience

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

mzTab-M: A Data Standard for Sharing Quantitative Results in Mass Spectrometry Metabolomics

1 reference

https://api.crossref.org/works/10.1038%2FS41596-020-0317-5

7 January 2021

Molecular networking prospection and characterization of terpenoids and C<sub>15</sub>-acetogenins in Brazilian seaweed extracts

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1038/S41596-020-0317-5

Determination ofD-amino acids. II. Use of a bifunctional reagent, 1,5-difluoro-2,4-dinitrobenzene

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1038/S41596-020-0317-5

CASMI 2014: Challenges, Solutions and Results

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1038/S41596-020-0317-5

High-Resolution Liquid Chromatography Tandem Mass Spectrometry Enables Large Scale Molecular Characterization of Dissolved Organic Matter

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1038/S41596-020-0317-5

Identifiers

DOI

10.1038/S41596-020-0317-5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32405051%20AND%20SRC:MED&resulttype=core&format=json

18 May 2020

1 reference