(Q33614929)

27820803

28 July 2017

title

Dereplication of peptidic natural products through database search of mass spectra (English)

1 reference

28 July 2017

0 references

1 reference

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27820803%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Alla Mikheenko

3

1 reference

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4 June 2020

Neha Garg

4

1 reference

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4 June 2020

Kentaro Takada

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27820803%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

8

Pieter C Dorrestein

1 reference

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4 June 2020

5

Louis-Felix Nothias

1 reference

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4 June 2020

1

Hosein Mohimani

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27820803%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

9

Pavel A Pevzner

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27820803%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

author name string

Akihiro Ninomiya

6

1 reference

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4 June 2020

publication date

31 October 2016

1 reference

27820803

28 July 2017

published in

Nature Chemical Biology

1 reference

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4 June 2020

volume

13

1 reference

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4 June 2020

issue

1

1 reference

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4 June 2020

page(s)

30-37

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27820803%20AND%20SRC:MED&resulttype=core&format=json

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

4 June 2020

cites work

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Dereplication, sequencing and identification of peptidic natural products: from genome mining to peptidogenomics to spectral networks

21 June 2018

1 reference

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Illuminating the dark matter in metabolomics

21 June 2018

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Computational approaches to natural product discovery

21 June 2018

1 reference

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Minimum Information about a Biosynthetic Gene cluster.

21 June 2018

1 reference

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Using fragmentation trees and mass spectral trees for identifying unknown compounds in metabolomics

21 June 2018

1 reference

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21 June 2018

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Molecular networking and pattern-based genome mining improves discovery of biosynthetic gene clusters and their products from Salinispora species

21 June 2018

1 reference

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Molecular cartography of the human skin surface in 3D

21 June 2018

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The re-emergence of natural products for drug discovery in the genomics era.

21 June 2018

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A new antibiotic kills pathogens without detectable resistance

21 June 2018

1 reference

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MS-GF+ makes progress towards a universal database search tool for proteomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5409158

Cyclic lipodepsipeptides produced by Pseudomonas spp. naturally present in raw milk induce inhibitory effects on microbiological inhibitor assays for antibiotic residue screening.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5409158

Automated genome mining of ribosomal peptide natural products

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5409158

Insights into naturally minimised Streptomyces albus J1074 genome.

21 June 2018

1 reference

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Champacyclin, a new cyclic octapeptide from Streptomyces strain C42 isolated from the Baltic Sea.

21 June 2018

1 reference

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Discovery and development of first in class antifungal caspofungin (CANCIDAS®)--a case study

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5409158

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5409158

MS/MS-based networking and peptidogenomics guided genome mining revealed the stenothricin gene cluster in Streptomyces roseosporus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5409158

Molecular networking as a dereplication strategy

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5409158

Interspecies interactions stimulate diversification of the Streptomyces coelicolor secreted metabolome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5409158

A new approach to evaluating statistical significance of spectral identifications

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5409158

Ribosomally synthesized and post-translationally modified peptide natural products: overview and recommendations for a universal nomenclature

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5409158

Dereplicating nonribosomal peptides using an informatic search algorithm for natural products (iSNAP) discovery.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5409158

Mass spectral molecular networking of living microbial colonies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5409158

Comparative genomics reveals evidence of marine adaptation in Salinispora species

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5409158

Multiplex de novo sequencing of peptide antibiotics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5409158

A mass spectrometry-guided genome mining approach for natural product peptidogenomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5409158

Target-decoy approach and false discovery rate: when things may go wrong

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5409158

Microbial competition between Bacillus subtilis and Staphylococcus aureus monitored by imaging mass spectrometry

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5409158

A proteomics approach to discovering natural products and their biosynthetic pathways

21 June 2018

1 reference

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Antibiotics for emerging pathogens

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5409158

Dereplication and de novo sequencing of nonribosomal peptides

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5409158

Drug discovery and natural products: end of an era or an endless frontier?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5409158

Predicting intensity ranks of peptide fragment ions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5409158

A ranking-based scoring function for peptide-spectrum matches

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5409158

Spectral probabilities and generating functions of tandem mass spectra: a strike against decoy databases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5409158

Spectral networks: a new approach to de novo discovery of protein sequences and posttranslational modifications

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5409158

Protein identification by spectral networks analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5409158

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5409158

METLIN: a metabolite mass spectral database

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5409158

Identification of post-translational modifications by blind search of mass spectra.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5409158

PepNovo: de novo peptide sequencing via probabilistic network modeling

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5409158

Modular Peptide Synthetases Involved in Nonribosomal Peptide Synthesis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5409158

Kurstakins: a new class of lipopeptides isolated from Bacillus thuringiensis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5409158

The genes degQ, pps, and lpa-8 (sfp) are responsible for conversion of Bacillus subtilis 168 to plipastatin production

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5409158

Massetolides A-H, antimycobacterial cyclic depsipeptides produced by two pseudomonads isolated from marine habitats

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5409158

A chemocentric view of the natural product inventory

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5409158

Tolaasins A--E, five new lipodepsipeptides produced by Pseudomonas tolaasii

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5409158

Sequencing of bacitracin A and related minor components by liquid chromatography/electrospray ionization ion trap tandem mass spectrometry.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5409158

Surugamides A–E, Cyclic Octapeptides with Four d-Amino Acid Residues, from a Marine Streptomyces sp.: LC–MS-Aided Inspection of Partial Hydrolysates for the Distinction of d- and l-Amino Acid Residues in the Sequence

30 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27820803

12 December 2020

inferred from PubMed ID database lookup

[Metabolic products of microorganisms. 134. Stenothricin, a new inhibitor of the bacterial cell wall synthesis (author's transl)]

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27820803

12 December 2020

inferred from PubMed ID database lookup

Revised structure of mycosubtilin, a peptidolipid antibiotic from Bacillus subtilis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27820803

12 December 2020

inferred from PubMed ID database lookup

Structure determination of tolaasin, an extracellular lipodepsipeptide produced by the mushroom pathogen, Pseudomonas tolaasii Paine

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNCHEMBIO.2219

7 January 2021

inferred from DOI database lookup

NRPSpredictor2--a web server for predicting NRPS adenylation domain specificity

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNCHEMBIO.2219

7 January 2021

inferred from DOI database lookup

Skin molecule maps using mass spectrometry

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1038/NCHEMBIO.2219

Identifiers

DOI

10.1038/NCHEMBIO.2219

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27820803%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

4 June 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27820803%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

27820803

1 reference