(Q21128724)

PubMed

PubMed publication ID

16 August 2022

Edward L Braun

2

Edward L

Braun

1 reference

PubMed

PubMed publication ID

24795852

A large-scale, higher-level, molecular phylogenetic study of the insect order Lepidoptera (moths and butterflies)

16 August 2022

language of work or name

English

0 references

publication date

2014

0 references

published in

PeerJ

0 references

volume

2

0 references

page(s)

e361

0 references

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006227

Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006227

Phylogenomic evidence for multiple losses of flight in ratite birds

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006227

Strong mitochondrial DNA support for a Cretaceous origin of modern avian lineages

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006227

Waves of genomic hitchhikers shed light on the evolution of gamebirds (Aves: Galliformes)

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006227

Comparison of the chicken and turkey genomes reveals a higher rate of nucleotide divergence on microchromosomes than macrochromosomes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006227

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006227

Broad phylogenomic sampling improves resolution of the animal tree of life

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006227

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006227

MrBayes 3: Bayesian phylogenetic inference under mixed models

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006227

MODELTEST: testing the model of DNA substitution

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006227

From reptilian phylogenomics to reptilian genomes: analyses of c-Jun and DJ-1 proto-oncogenes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006227

A phylogenomic study of birds reveals their evolutionary history

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006227

Phylogenomics and the reconstruction of the tree of life

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006227

Increased taxon sampling greatly reduces phylogenetic error

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006227

Assessing phylogenetic relationships among galliformes: a multigene phylogeny with expanded taxon sampling in Phasianidae

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006227

Homoplastic microinversions and the avian tree of life

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006227

A mitogenomic perspective on the ancient, rapid radiation in the Galliformes with an emphasis on the Phasianidae

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006227

Evolution of an avian pigmentation gene correlates with a measure of sexual selection

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006227

Bushes in the tree of life

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006227

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

19 March 2017

1 reference

https://api.crossref.org/works/10.7717/PEERJ.361

How low can you go? The effects of mutation rate on the accuracy of species-tree estimation

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006227

Identifying localized biases in large datasets: a case study using the avian tree of life

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006227

STRAW: Species TRee Analysis Web server

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006227

Empirical evaluation of partitioning schemes for phylogenetic analyses of mitogenomic data: an avian case study.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006227

Ratite nonmonophyly: independent evidence from 40 novel Loci

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006227

Impact of deep coalescence on the reliability of species tree inference from different types of DNA markers in mammals

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006227

Testing hypotheses about the sister group of the passeriformes using an independent 30-locus data set.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006227

A macroevolutionary perspective on multiple sexual traits in the phasianidae (galliformes)

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006227

The impact of taxon sampling on phylogenetic inference: a review of two decades of controversy

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006227

Maximum likelihood estimates of species trees: how accuracy of phylogenetic inference depends upon the divergence history and sampling design

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006227

Toward resolving deep neoaves phylogeny: data, signal enhancement, and priors

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006227

A molecular timescale for galliform birds accounting for uncertainty in time estimates and heterogeneity of rates of DNA substitutions across lineages and sites

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006227

A molecular phylogeny of the pheasants and partridges suggests that these lineages are not monophyletic

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006227

Microevolutionary processes generate phylogenomic discordance at ancient divergences

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006227

The root of the mammalian tree inferred from whole mitochondrial genomes

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006227

Evolutionary genetics. Clonal inheritance of avian mitochondrial DNA.

30 May 2018

1 reference

Do avian mitochondria recombine?

21 January 2018

1 reference

Introns outperform exons in analyses of basal avian phylogeny using clathrin heavy chain genes

21 January 2018

1 reference

Sampling strategies for species trees: the effects on phylogenetic inference of the number of genes, number of individuals, and whether loci are mitochondrial, sex-linked, or autosomal

21 January 2018

1 reference

Phylogenetics, biogeography and classification of, and character evolution in, gamebirds (Aves: Galliformes): effects of character exclusion, data partitioning and missing data

21 January 2018

1 reference

Are transposable element insertions homoplasy free?: an examination using the avian tree of life

21 January 2018

1 reference

Insertion events of CR1 retrotransposable elements elucidate the phylogenetic branching order in galliform birds

21 January 2018

1 reference

BUCKy: gene tree/species tree reconciliation with Bayesian concordance analysis

21 January 2018

1 reference

Polytomies and Bayesian phylogenetic inference

21 January 2018

1 reference

Estimating species trees from unrooted gene trees.

21 January 2018

1 reference

Japanese quail: an efficient animal model for the production of transgenic avians

21 January 2018

1 reference

Evolution of the mitochondrial DNA control region and cytochrome b genes and the inference of phylogenetic relationships in the avian genus Lophura (Galliformes).

21 January 2018

1 reference

Improved bootstrap confidence limits in large-scale phylogenies, with an example from Neo-Astragalus (Leguminosae).

21 January 2018

1 reference

21 January 2018

1 reference

Comparative molecular evolution and phylogenetic utility of 3′-UTRs and introns in Galliformes

21 January 2018

1 reference

POLYTOMIES, THE POWER OF PHYLOGENETIC INFERENCE, AND THE STOCHASTIC NATURE OF MOLECULAR EVOLUTION: A COMMENT ON WALSH ET AL. (1999)

21 January 2018

1 reference

Examining Basal Avian Divergences with Mitochondrial Sequences: Model Complexity, Taxon Sampling, and Sequence Length

21 January 2018

1 reference

Phylogenetic affinities of evolutionarily enigmatic African galliforms: the Stone PartridgePtilopachus petrosusand Nahan's FrancolinFrancolinus nahani,and support for their sister relationship with New World quails

21 January 2018

1 reference

PHYLOGENETIC POSITION OF THE NEW WORLD QUAIL (ODONTOPHORIDAE): EIGHT NUCLEAR LOCI AND THREE MITOCHONDRIAL REGIONS CONTRADICT MORPHOLOGY AND THE SIBLEY-AHLQUIST TAPESTRY

21 January 2018

1 reference

A well-tested set of primers to amplify regions spread across the avian genome

21 January 2018

1 reference

Error in Phylogenetic Estimation for Bushes in the Tree of Life

21 January 2018

1 reference

Bayesian estimation of concordance among gene trees.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4006227

INFERRING PHYLOGENIES FROM mtDNA VARIATION: MITOCHONDRIAL-GENE TREES VERSUS NUCLEAR-GENE TREES.

29 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24795852

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Bayesian Estimation of Concordance Among Gene Trees

1 reference

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.7717/PEERJ.361

1 reference

1 reference

1 reference

PubMed publication ID

24795852

1 reference