(Q28686868)

5

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author name string

Hai-Son Le

1

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Marcel H Schulz

2

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Brenna M McCauley

3

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Veronica F Hinman

Creative Commons Attribution-NonCommercial 3.0 Unported

4

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language of work or name

English

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publication date

1 May 2013

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published in

Nucleic Acids Research

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volume

41

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page(s)

e109

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issue

10

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copyright license

start time

5 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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Biases in Illumina transcriptome sequencing caused by random hexamer priming

17 March 2017

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Transcript length bias in RNA-seq data confounds systems biology

17 March 2017

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17 March 2017

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17 March 2017

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17 March 2017

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

17 March 2017

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17 March 2017

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A genomic regulatory network for development

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Profile hidden Markov models

17 March 2017

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Primer3Plus, an enhanced web interface to Primer3

17 March 2017

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Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

19 March 2017

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RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

7 April 2017

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Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

7 April 2017

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7 April 2017

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Substantial biases in ultra-short read data sets from high-throughput DNA sequencing

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Streaming fragment assignment for real-time analysis of sequencing experiments

7 April 2017

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A comprehensive comparison of RNA-Seq-based transcriptome analysis from reads to differential gene expression and cross-comparison with microarrays: a case study in Saccharomyces cerevisiae

3 June 2018

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A survey of error-correction methods for next-generation sequencing

3 June 2018

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Comprehensive analysis of RNA-Seq data reveals extensive RNA editing in a human transcriptome

3 June 2018

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Detecting genomic indel variants with exact breakpoints in single- and paired-end sequencing data using SplazerS.

3 June 2018

1 reference

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GC-content normalization for RNA-Seq data

3 June 2018

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SEED: efficient clustering of next-generation sequences

3 June 2018

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Error correction of high-throughput sequencing datasets with non-uniform coverage

3 June 2018

1 reference

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ECHO: a reference-free short-read error correction algorithm

3 June 2018

1 reference

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Improving RNA-Seq expression estimates by correcting for fragment bias

3 June 2018

1 reference

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A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

3 June 2018

1 reference

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HiTEC: accurate error correction in high-throughput sequencing data

3 June 2018

1 reference

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Quake: quality-aware detection and correction of sequencing errors

3 June 2018

1 reference

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New tools and methods for direct programmatic access to the dbSNP relational database

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3664804

De novo assembly and analysis of RNA-seq data.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3664804

Modeling non-uniformity in short-read rates in RNA-Seq data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3664804

Recount: expectation maximization based error correction tool for next generation sequencing data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3664804

Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3664804

Genome-wide analysis of allelic expression imbalance in human primary cells by high-throughput transcriptome resequencing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3664804

Next generation software for functional trend analysis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3664804

SHREC: a short-read error correction method

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3664804

Efficient frequency-based de novo short-read clustering for error trimming in next-generation sequencing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3664804

SeqAn an efficient, generic C++ library for sequence analysis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3664804

Evolutionary plasticity of developmental gene regulatory network architecture

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3664804

Correcting errors in short reads by multiple alignments.

3 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT215

Reptile: representative tiling for short read error correction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT215

Phylogenetic relationships among extant classes of echinoderms, as inferred from sequences of 18S rDNA, coincide with relationships deduced from the fossil record.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT215

A tutorial on spectral clustering

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT215

21 January 2018

Identifiers

DOI

10.1093/NAR/GKT215

1 reference

2010566

2010566

1 reference

1 reference

1 reference