(Q31125424)

English

Directional RNA-seq reveals highly complex condition-dependent transcriptomes in E. coli K12 through accurate full-length transcripts assembling

scientific article published on 30 July 2013

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

Directional RNA-seq reveals highly complex condition-dependent transcriptomes in E. coli K12 through accurate full-length transcripts assembling (English)

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

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Escherichia coli

0 references

1 reference

based on heuristic

inferred from title

author name string

Shan Li

1

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

Xia Dong

2

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

Zhengchang Su

3

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Europe PubMed Central

PMC publication ID

18 August 2017

language of work or name

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publication date

30 July 2013

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Europe PubMed Central

PMC publication ID

18 August 2017

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Europe PubMed Central

PMC publication ID

18 August 2017

14

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

520

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

Transcription start site associated RNAs in bacteria.

1 reference

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Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis

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Prediction of complete gene structures in human genomic DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3734233

21 June 2018

Evidence for a fourteen-gene, phnC to phnP locus for phosphonate metabolism in Escherichia coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3734233

21 June 2018

Promoter structure, promoter recognition, and transcription activation in prokaryotes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3734233

21 June 2018

Fitting a mixture model by expectation maximization to discover motifs in biopolymers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3734233

21 June 2018

Molecular biology of carbon-phosphorus bond cleavage. Cloning and sequencing of the phn (psiD) genes involved in alkylphosphonate uptake and C-P lyase activity in Escherichia coli B.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3734233

21 June 2018

Molecular analysis of the cryptic and functional phn operons for phosphonate use in Escherichia coli K-12.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3734233

21 June 2018

DnaK, DnaJ, and GrpE are required for flagellum synthesis in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3734233

21 June 2018

Operon prediction without a training set.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-520

21 January 2018

Operon prediction for sequenced bacterial genomes without experimental information

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-520

21 January 2018

Comparative genomics of small RNAs in bacterial genomes.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-520

21 January 2018

Transcriptome Complexity in a Genome-Reduced Bacterium

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-520

21 January 2018

Modular analysis of the transcriptional regulatory network of E. coli.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-520

21 January 2018

Using non-uniform read distribution models to improve isoform expression inference in RNA-Seq.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-520

21 January 2018

Patterns of cleavages induced by lead ions in defined RNA secondary structure motifs.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-520

21 January 2018

Accumulation of intermediates of the carbon-phosphorus lyase pathway for phosphonate degradation in phn mutants of Escherichia coli.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-520

21 January 2018

Computational prediction of operons in Synechococcus sp. WH8102.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3734233

25 November 2018

Efficient annotation of bacterial genomes for small, noncoding RNAs using the integrative computational tool sRNAPredict2

1 reference

https://pubmed.ncbi.nlm.nih.gov/23899370

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity

1 reference

https://pubmed.ncbi.nlm.nih.gov/23899370

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2164-14-520

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

Dimensions Publication ID

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2164-14-520

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

ResearchGate publication ID

0 references

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