(Q33376019)

English

Toward a molecular understanding of the interaction of dual specificity phosphatases with substrates: insights from structure-based modeling and high throughput screening

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scholarly article

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Europe PubMed Central

PubMed publication ID

26 July 2017

6 references

19 September 2019

28 September 2019

2 October 2019

20 November 2019

20 January 2021

22 August 2022

Toward a molecular understanding of the interaction of dual specificity phosphatases with substrates: insights from structure-based modeling and high throughput screening (English)

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

biomedical investigative technique

1 reference

19 September 2019

1 reference

28 September 2019

mechanism of action

1 reference

2 October 2019

1 reference

20 November 2019

enzyme inhibitor

1 reference

20 January 2021

5

object named as

Ivet Bahar

0 references

2

object named as

John S Lazo

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

3

object named as

Peter Wipf

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

Kay M. Brummond

4

object named as

Kay M Brummond

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Europe PubMed Central

PubMed publication ID

26 July 2017

author name string

Ahmet Bakan

1

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

publication date

1 January 2008

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

Current Medicinal Chemistry

7 references

Europe PubMed Central

PubMed publication ID

26 July 2017

19 September 2019

28 September 2019

2 October 2019

20 November 2019

20 January 2021

22 August 2022

15

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

25

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

2536-2544

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

copyright license

Creative Commons Attribution 2.5 Generic

6 references

Europe PubMed Central

19 September 2019

Europe PubMed Central

28 September 2019

Europe PubMed Central

2 October 2019

Europe PubMed Central

20 November 2019

Europe PubMed Central

20 January 2021

Europe PubMed Central

22 August 2022

Flexible ligand docking to multiple receptor conformations: a practical alternative

1 reference

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21 June 2018

Reaching for high-hanging fruit in drug discovery at protein-protein interfaces

1 reference

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21 June 2018

DrugBank: a knowledgebase for drugs, drug actions and drug targets

1 reference

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21 June 2018

A hierarchy of timescales in protein dynamics is linked to enzyme catalysis

1 reference

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21 June 2018

Intrinsic motions along an enzymatic reaction trajectory

1 reference

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21 June 2018

Intrinsic dynamics of enzymes in the unbound state and relation to allosteric regulation

1 reference

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21 June 2018

Role of mitogen-activated protein kinase phosphatases (MKPs) in cancer

1 reference

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21 June 2018

Predicting absolute ligand binding free energies to a simple model site

1 reference

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CDC25 phosphatases in cancer cells: key players? Good targets?

1 reference

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Structurally unique inhibitors of human mitogen-activated protein kinase phosphatase-1 identified in a pyrrole carboxamide library

1 reference

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Strategies for developing protein tyrosine phosphatase inhibitors

1 reference

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21 June 2018

What's new on CDC25 phosphatase inhibitors

1 reference

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21 June 2018

Targeting dual-specificity phosphatases: manipulating MAP kinase signalling and immune responses.

1 reference

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21 June 2018

Crystal structure of the MAP kinase binding domain and the catalytic domain of human MKP5

1 reference

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21 June 2018

Ligand configurational entropy and protein binding

1 reference

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21 June 2018

Kinetic and structural studies of specific protein-protein interactions in substrate catalysis by Cdc25B phosphatase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

21 June 2018

Crystal structure of the catalytic domain of human DUSP5, a dual specificity MAP kinase protein phosphatase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

21 June 2018

Protein tyrosine phosphatases: from genes, to function, to disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

21 June 2018

Independent mechanistic inhibition of cdc25 phosphatases by a natural product caulibugulone

1 reference

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21 June 2018

Targeting protein-protein interactions with small molecules: challenges and perspectives for computational binding epitope detection and ligand finding

1 reference

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21 June 2018

A critical assessment of docking programs and scoring functions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

21 June 2018

Prediction of protein-ligand interactions. Docking and scoring: successes and gaps

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

21 June 2018

Protein-ligand docking: current status and future challenges

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

21 June 2018

Crystal structure of the catalytic domain of human MAP kinase phosphatase 5: structural insight into constitutively active phosphatase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

21 June 2018

Cdc25: mechanisms of checkpoint inhibition and recovery

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

21 June 2018

Solution-phase synthesis of a tricyclic pyrrole-2-carboxamide discovery library applying a stetter-Paal-Knorr reaction sequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

21 June 2018

Structural basis of docking interactions between ERK2 and MAP kinase phosphatase 3.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

21 June 2018

Targeting the PTPome in human disease

1 reference

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21 June 2018

New insights into the catalytic activation of the MAPK phosphatase PAC-1 induced by its substrate MAPK ERK2 binding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

21 June 2018

Inhibitors of protein tyrosine phosphatases: next-generation drugs?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

21 June 2018

Dual specificity protein phosphatases: therapeutic targets for cancer and Alzheimer's disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

21 June 2018

The benzo[c]phenanthridine alkaloid, sanguinarine, is a selective, cell-active inhibitor of mitogen-activated protein kinase phosphatase-1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

21 June 2018

Remote hot spots mediate protein substrate recognition for the Cdc25 phosphatase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

21 June 2018

Cdc25 phosphatases and cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

21 June 2018

Discovery and characterization of novel small molecule inhibitors of human Cdc25B dual specificity phosphatase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

21 June 2018

Protein tyrosine phosphatases in the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

21 June 2018

Mitogen-activated protein kinase phosphatase-1 is overexpressed in non-small cell lung cancer and is an independent predictor of outcome in patients.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

21 June 2018

Structure and regulation of MAPK phosphatases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

21 June 2018

The many roles of computation in drug discovery

1 reference

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PANTHER: a library of protein families and subfamilies indexed by function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

21 June 2018

Potential tumor suppressive pathway involving DUSP6/MKP-3 in pancreatic cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

21 June 2018

Solution structure of the MAPK phosphatase PAC-1 catalytic domain. Insights into substrate-induced enzymatic activation of MKP

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

21 June 2018

Molecular recognition and docking algorithms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

21 June 2018

Overexpression of Cdc25B, an androgen receptor coactivator, in prostate cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

21 June 2018

Dual-specificity phosphatases as targets for antineoplastic agents

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

21 June 2018

MAP kinase phosphatases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

21 June 2018

Lead discovery using molecular docking

1 reference

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21 June 2018

Oxindole-based inhibitors of cyclin-dependent kinase 2 (CDK2): design, synthesis, enzymatic activities, and X-ray crystallographic analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

21 June 2018

Discovery and biological evaluation of a new family of potent inhibitors of the dual specificity protein phosphatase Cdc25.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

21 June 2018

Solution structure of ERK2 binding domain of MAPK phosphatase MKP-3: structural insights into MKP-3 activation by ERK2

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

21 June 2018

Multiple regions of MAP kinase phosphatase 3 are involved in its recognition and activation by ERK2.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

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Catalytic activation of mitogen-activated protein (MAP) kinase phosphatase-1 by binding to p38 MAP kinase: critical role of the p38 C-terminal domain in its negative regulation

1 reference

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Cell cycle regulation by the Cdc25 phosphatase family

1 reference

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Accommodating protein flexibility in computational drug design

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

21 June 2018

Dual specificity phosphatases: a gene family for control of MAP kinase function.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

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Crystal structure of the catalytic subunit of Cdc25B required for G2/M phase transition of the cell cycle

1 reference

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The effect of multiple binding modes on empirical modeling of ligand docking to proteins

1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

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Protein tyrosine phosphatases: mechanisms of catalysis and regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

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Crystal structure of the catalytic domain of the human cell cycle control phosphatase, Cdc25A

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

21 June 2018

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1 reference

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1 reference

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21 June 2018

Development and validation of a genetic algorithm for flexible docking

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

21 June 2018

Comparative protein modelling by satisfaction of spatial restraints

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

21 June 2018

Receptor-based virtual ligand screening for the identification of novel CDC25 phosphatase inhibitors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

31 October 2018

Calculations of protein-ligand binding entropy of relative and overall molecular motions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

31 October 2018

Fluorinated NSC as a Cdc25 inhibitor.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

31 October 2018

Ensemble modeling of substrate binding to cytochromes P450: analysis of catalytic differences between CYP1A orthologs.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

31 October 2018

A five-gene signature and clinical outcome in non-small-cell lung cancer

1 reference

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31 October 2018

Novel benzofuran inhibitors of human mitogen-activated protein kinase phosphatase-1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

31 October 2018

Experimental validation of the docking orientation of Cdc25 with its Cdk2-CycA protein substrate.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

31 October 2018

Representing receptor flexibility in ligand docking through relevant normal modes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

31 October 2018

Structural mechanism of oxidative regulation of the phosphatase Cdc25B via an intramolecular disulfide bond

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

31 October 2018

Allosteric inhibition of protein tyrosine phosphatase 1B.

1 reference

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31 October 2018

Protein flexibility in ligand docking and virtual screening to protein kinases.

1 reference

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31 October 2018

Cell-active dual specificity phosphatase inhibitors identified by high-content screening

1 reference

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31 October 2018

Overexpression of mitogen-activated protein kinase phosphatases MKP1, MKP2 in human breast cancer

1 reference

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31 October 2018

Quantification of protein surfaces, volumes and atom-atom contacts using a constrained Voronoi procedure

1 reference

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31 October 2018

Identification of a potent and selective pharmacophore for Cdc25 dual specificity phosphatase inhibitors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2764859

31 October 2018

Induction of mammary gland hyperplasia in transgenic mice over-expressing human Cdc25B.

1 reference

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31 October 2018

Catalytic Activation of the Phosphatase MKP-3 by ERK2 Mitogen-Activated Protein Kinase

1 reference

https://pubmed.ncbi.nlm.nih.gov/18855677

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Modeling of Cdc25B Dual Specifity Protein Phosphatase Inhibitors: Docking of Ligands and Enzymatic Inhibition Mechanism

1 reference

https://pubmed.ncbi.nlm.nih.gov/18855677

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Normal mode analysis as a prerequisite for drug design: Application to matrix metalloproteinases inhibitors

1 reference

https://pubmed.ncbi.nlm.nih.gov/18855677

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mapping ERK2-MKP3 binding interfaces by hydrogen/deuterium exchange mass spectrometry

1 reference

https://pubmed.ncbi.nlm.nih.gov/18855677

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.2174/092986708785909003

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

ResearchGate publication ID

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