(Q33823011)

29 July 2017

title

A highly conserved family of domains related to the DNA-glycosylase fold helps predict multiple novel pathways for RNA modifications (English)

1 reference

29 July 2017

1

A Maxwell Burroughs

0 references

Aravind L Iyer

series ordinal

2

object named as

L Aravind

0 references

author name string

A Maxwell Burroughs

series ordinal

1

1 reference

29 July 2017

publication date

5 March 2014

1 reference

29 July 2017

1 reference

29 July 2017

volume

11

1 reference

29 July 2017

issue

4

1 reference

29 July 2017

page(s)

360-372

1 reference

FunCoup 3.0: database of genome-wide functional coupling networks

29 July 2017

cites work

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4 July 2018

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4 July 2018

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Fibronectin-binding protein, FbpA, is the adhesin responsible for pathogenesis of Listeria monocytogenes infection

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A ribosome-bound quality control complex triggers degradation of nascent peptides and signals translation stress

4 July 2018

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4 July 2018

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The tumor suppressor Caliban regulates DNA damage-induced apoptosis through p53-dependent and -independent activity

4 July 2018

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4 July 2018

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The PavA-like fibronectin-binding protein of Enterococcus faecalis, EfbA, is important for virulence in a mouse model of ascending urinary tract infection

4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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Functional diversification of the RING finger and other binuclear treble clef domains in prokaryotes and the early evolution of the ubiquitin system

4 July 2018

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Role of fibronectin-binding protein A in Clostridium difficile intestinal colonization.

4 July 2018

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Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group.

4 July 2018

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The RNA Modification Database, RNAMDB: 2011 update

4 July 2018

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Manganese Binds to Clostridium difficile Fbp68 and Is Essential for Fibronectin Binding

4 July 2018

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Fibronectin: a multidomain host adhesin targeted by bacterial fibronectin-binding proteins

4 July 2018

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Structural Basis for Fe–S Cluster Assembly and tRNA Thiolation Mediated by IscS Protein–Protein Interactions

4 July 2018

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Oxidative damage to RNA: mechanisms, consequences, and diseases

4 July 2018

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Fast and accurate automatic structure prediction with HHpred.

4 July 2018

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Lactococcus lactis expressing either Staphylococcus aureus fibronectin-binding protein A or Listeria monocytogenes internalin A can efficiently internalize and deliver DNA in human epithelial cells

4 July 2018

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Kalign2: high-performance multiple alignment of protein and nucleotide sequences allowing external features

4 July 2018

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Searching protein structure databases with DaliLite v.3

4 July 2018

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The Jpred 3 secondary structure prediction server

4 July 2018

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NCBI BLAST: a better web interface

4 July 2018

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Molecular control of bacterial death and lysis

4 July 2018

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An embarrassment of riches: the enzymology of RNA modification

4 July 2018

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Structure and mechanism for DNA lesion recognition

4 July 2018

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Re-programming of translation following cell stress allows IRES-mediated translation to predominate

4 July 2018

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The RAGNYA fold: a novel fold with multiple topological variants found in functionally diverse nucleic acid, nucleotide and peptide-binding proteins

4 July 2018

1 reference

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RNA damage and surveillance under oxidative stress

4 July 2018

1 reference

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The prokaryotic antecedents of the ubiquitin-signaling system and the early evolution of ubiquitin-like beta-grasp domains

4 July 2018

1 reference

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Impaired control of IRES-mediated translation in X-linked dyskeratosis congenita

4 July 2018

1 reference

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Crystal structure of Bacillus anthracis ThiI, a tRNA-modifying enzyme containing the predicted RNA-binding THUMP domain

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4075521

Effects of nucleotide substitution and modification on the stability and structure of helix 69 from 28S rRNA

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4075521

Drosophila caliban, a nuclear export mediator, can function as a tumor suppressor in human lung cancer cells

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4075521

PavA of Streptococcus pneumoniae modulates adherence, invasion, and meningeal inflammation.

4 July 2018

1 reference

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The pseudouridine synthases: revisiting a mechanism that seemed settled

4 July 2018

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MUSCLE: a multiple sequence alignment method with reduced time and space complexity

4 July 2018

1 reference

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FbpA, a novel multifunctional Listeria monocytogenes virulence factor

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4075521

DNA lesion recognition by the bacterial repair enzyme MutM

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4075521

Structural characterization of the Fpg family of DNA glycosylases

4 July 2018

1 reference

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The enigma of endonuclease VIII.

4 July 2018

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Streptococcus pyogenes prtFII, but not sfbI, sfbII or fbp54, is represented more frequently among invasive-disease isolates of tropical Australia

4 July 2018

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Monophyly of class I aminoacyl tRNA synthetase, USPA, ETFP, photolyase, and PP-ATPase nucleotide-binding domains: implications for protein evolution in the RNA.

4 July 2018

1 reference

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Comparative genomics and evolution of proteins involved in RNA metabolism

4 July 2018

1 reference

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Structure of formamidopyrimidine-DNA glycosylase covalently complexed to DNA

4 July 2018

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Repair of oxidative DNA damage: mechanisms and functions

4 July 2018

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Structural analysis of an Escherichia coli endonuclease VIII covalent reaction intermediate

4 July 2018

1 reference

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The pavA gene of Streptococcus pneumoniae encodes a fibronectin-binding protein that is essential for virulence.

4 July 2018

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4 July 2018

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THUMP--a predicted RNA-binding domain shared by 4-thiouridine, pseudouridine synthases and RNA methylases

4 July 2018

1 reference

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Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGs)

4 July 2018

1 reference

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Predicting protein function by genomic context: quantitative evaluation and qualitative inferences

4 July 2018

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Guilt by association: contextual information in genome analysis

4 July 2018

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Crystal structure of a repair enzyme of oxidatively damaged DNA, MutM (Fpg), from an extreme thermophile, Thermus thermophilus HB8

4 July 2018

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Common fold in helix-hairpin-helix proteins

4 July 2018

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Disruption of the genes encoding antigen 85A and antigen 85B of Mycobacterium tuberculosis H37Rv: effect on growth in culture and in macrophages

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4075521

Using genomic information to investigate the function of ThiI, an enzyme shared between thiamin and 4-thiouridine biosynthesis

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4075521

The mechanism of pseudouridine synthase I as deduced from its interaction with 5-fluorouracil-tRNA.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4075521

Conserved domains in DNA repair proteins and evolution of repair systems

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4075521

AP site structural determinants for Fpg specific recognition

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4075521

Analysis of the genes encoding the antigen 85 complex and MPT51 from Mycobacterium avium

4 July 2018

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Biosynthesis of archaeosine, a novel derivative of 7-deazaguanosine specific to archaeal tRNA, proceeds via a pathway involving base replacement on the tRNA polynucleotide chain

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4075521

Analysis of compositionally biased regions in sequence databases

4 July 2018

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Pseudouridine synthases: four families of enzymes containing a putative uridine-binding motif also conserved in dUTPases and dCTP deaminases

4 July 2018

1 reference

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The helix-hairpin-helix DNA-binding motif: a structural basis for non-sequence-specific recognition of DNA.

4 July 2018

1 reference

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The crystal structure of GMP synthetase reveals a novel catalytic triad and is a structural paradigm for two enzyme families

4 July 2018

1 reference

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The catalytic mechanism of Fpg protein. Evidence for a Schiff base intermediate and amino terminus localization of the catalytic site

4 July 2018

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Studies on the catalytic mechanism of five DNA glycosylases. Probing for enzyme-DNA imino intermediates

4 July 2018

1 reference

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Transfer ribonucleic acid guanine transglycosylase isolated from rat liver

4 July 2018

1 reference

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Isolation and characterization of a guanine insertion enzyme, a specific tRNA transglycosylase, from Escherichia coli

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4075521

Expression of fibronectin-binding protein FbpA modulates adhesion in Streptococcus gordonii

4 July 2018

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Identification and characterization of a fibronectin-binding protein from Clostridium difficile

21 January 2018

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Mechanistic insights into sulfur relay by multiple sulfur mediators involved in thiouridine biosynthesis at tRNA wobble positions

21 January 2018

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tRNA-guanine transglycosylase from Escherichia coli: molecular mechanism and role of aspartate 89.

21 January 2018

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Critical aspartic acid residues in pseudouridine synthases

21 January 2018

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A conserved aspartate of tRNA pseudouridine synthase is essential for activity and a probable nucleophilic catalyst

21 January 2018

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NH2-terminal proline acts as a nucleophile in the glycosylase/AP-lyase reaction catalyzed by Escherichia coli formamidopyrimidine-DNA glycosylase (Fpg) protein

21 January 2018

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12 December 2020

Characterization ofEscherichia coliEndonuclease VIII

1 reference

12 December 2020

ISOLATION OF 3-METHYLURIDINE AND 3-METHYLCYTIDINE FROM SOLUBLERIBONUCLEIC ACID

1 reference

12 December 2020

Pneumococcal interaction with human dendritic cells: phagocytosis, survival, and induced adaptive immune response are manipulated by PavA

1 reference

12 December 2020

Fibronectin-binding proteins of Clostridium perfringens recognize the III1-C fragment of fibronectin

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12 December 2020

Identifiers

DOI

10.4161/RNA.28302

1 reference

29 July 2017

1 reference

29 July 2017

1 reference