(Q33873686)

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Network-guided analysis of genes with altered somatic copy number and gene expression reveals pathways commonly perturbed in metastatic melanoma

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scholarly article

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Europe PubMed Central

PubMed publication ID

29 July 2017

Network-guided analysis of genes with altered somatic copy number and gene expression reveals pathways commonly perturbed in metastatic melanoma (English)

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Europe PubMed Central

PubMed publication ID

29 July 2017

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metastatic melanoma

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based on heuristic

inferred from title

Stilianos Antonarakis

14

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Europe PubMed Central

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29 July 2017

Christian Iseli

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Christian Iseli

17

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Carlo Rivolta

11

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Ioannis Xenarios

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Ioannis Xenarios

12

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Jacques S Beckmann

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Jacques S Beckmann

15

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Armand Valsesia

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Armand Valsesia

1

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Victor Jongeneel

16

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C Victor Jongeneel

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29 July 2017

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Donata Rimoldi

2

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29 July 2017

Danielle Martinet

3

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29 July 2017

Mark Ibberson

4

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29 July 2017

Paola Benaglio

5

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29 July 2017

Manfredo Quadroni

6

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29 July 2017

Patrice Waridel

7

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29 July 2017

Muriel Gaillard

8

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29 July 2017

Mireille Pidoux

9

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29 July 2017

Blandine Rapin

10

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29 July 2017

Andrew J G Simpson

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29 July 2017

Brian J Stevenson

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29 July 2017

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publication date

8 April 2011

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29 July 2017

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29 July 2017

6

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29 July 2017

4

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29 July 2017

e18369

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Europe PubMed Central

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29 July 2017

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Creative Commons Attribution 4.0 International

8 April 2011

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April 2022 Public Data File from Crossref

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describes a project that uses

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LAU-Me246.M1-LCL

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LAU-Me280.R.LN-LCL

0 references

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Mutations in GNA11 in uveal melanoma

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5 July 2018

Pathway Commons, a web resource for biological pathway data

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5 July 2018

Cancer stem cells versus phenotype-switching in melanoma

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A re-evaluation of the "oncogenic" nature of Wnt/beta-catenin signaling in melanoma and other cancers

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Somatic alterations in the melanoma genome: a high-resolution array-based comparative genomic hybridization study

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5 July 2018

Targeting fibroblast growth factor receptors blocks PI3K/AKT signaling, induces apoptosis, and impairs mammary tumor outgrowth and metastasis

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5 July 2018

Pathway analysis of breast cancer genome-wide association study highlights three pathways and one canonical signaling cascade

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5 July 2018

Interplay of cadherin-mediated cell adhesion and canonical Wnt signaling

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Eph receptors and ephrins in cancer: bidirectional signalling and beyond

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Automated network analysis identifies core pathways in glioblastoma

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5 July 2018

The landscape of somatic copy-number alteration across human cancers

1 reference

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5 July 2018

Signatures of mutation and selection in the cancer genome

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5 July 2018

Systematic sequencing of renal carcinoma reveals inactivation of histone modifying genes

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5 July 2018

Identification of networks of co-occurring, tumor-related DNA copy number changes using a genome-wide scoring approach

1 reference

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5 July 2018

Gene set enrichment analysis provides insight into novel signalling pathways in breast cancer stem cells

1 reference

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5 July 2018

Somatic mutations of the Parkinson's disease-associated gene PARK2 in glioblastoma and other human malignancies

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5 July 2018

PICNIC: an algorithm to predict absolute allelic copy number variation with microarray cancer data

1 reference

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5 July 2018

Aberrant expression of Notch signaling molecules in patients with immune thrombocytopenic purpura

1 reference

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5 July 2018

The FRS2 family of docking/scaffolding adaptor proteins as therapeutic targets of cancer treatment

1 reference

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5 July 2018

High-resolution genomic copy number profiling of glioblastoma multiforme by single nucleotide polymorphism DNA microarray

1 reference

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5 July 2018

Integrated analysis of breast cancer cell lines reveals unique signaling pathways

1 reference

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5 July 2018

Genomic copy number determination in cancer cells from single nucleotide polymorphism microarrays based on quantitative genotyping corrected for aneuploidy.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072964

5 July 2018

Frequent somatic mutations of GNAQ in uveal melanoma and blue naevi

1 reference

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5 July 2018

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

1 reference

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5 July 2018

Somatic mutations affect key pathways in lung adenocarcinoma

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5 July 2018

NK cells and cancer immunosurveillance.

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5 July 2018

iRefIndex: a consolidated protein interaction database with provenance

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5 July 2018

Core signaling pathways in human pancreatic cancers revealed by global genomic analyses

1 reference

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5 July 2018

Erythropoietin-producing hepatocyte B6 variant-derived peptides with the ability to induce glioma-reactive cytotoxic T lymphocytes in human leukocyte antigen-A2+ glioma patients

1 reference

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5 July 2018

Oncogenic BRAF regulates melanoma proliferation through the lineage specific factor MITF.

1 reference

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5 July 2018

A probe-density-based analysis method for array CGH data: simulation, normalization and centralization.

1 reference

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5 July 2018

G-protein-coupled receptors and melanoma

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072964

5 July 2018

Maintenance of intratumoral androgens in metastatic prostate cancer: a mechanism for castration-resistant tumor growth

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072964

5 July 2018

Tumor angiogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072964

5 July 2018

Regulation of growth factor signaling by FRS2 family docking/scaffold adaptor proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072964

5 July 2018

Wnt signalling and its impact on development and cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072964

5 July 2018

DNA amplification is a ubiquitous mechanism of oncogene activation in lung and other cancers.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072964

5 July 2018

Relative protein quantification by isobaric SILAC with immonium ion splitting (ISIS).

1 reference

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5 July 2018

CGH microarrays and cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072964

5 July 2018

Genomic imbalances in 5918 malignant epithelial tumors: an explorative meta-analysis of chromosomal CGH data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072964

5 July 2018

Normalization of array-CGH data: influence of copy number imbalances

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072964

5 July 2018

Melanosomes--dark organelles enlighten endosomal membrane transport

1 reference

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5 July 2018

Architectures of somatic genomic rearrangement in human cancer amplicons at sequence-level resolution

1 reference

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5 July 2018

Novel somatic and germline mutations in cancer candidate genes in glioblastoma, melanoma, and pancreatic carcinoma

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5 July 2018

Metabotropic glutamate receptor 1 and glutamate signaling in human melanoma

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5 July 2018

G-protein-coupled receptors and cancer.

1 reference

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5 July 2018

A faster circular binary segmentation algorithm for the analysis of array CGH data

1 reference

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5 July 2018

PANTHER version 6: protein sequence and function evolution data with expanded representation of biological pathways

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5 July 2018

Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach.

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5 July 2018

The consensus coding sequences of human breast and colorectal cancers

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5 July 2018

Increased Wnt signaling triggers oncogenic conversion of human breast epithelial cells by a Notch-dependent mechanism

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5 July 2018

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Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

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5 July 2018

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1 reference

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5 July 2018

Somatic mutations of the protein kinase gene family in human lung cancer

1 reference

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1 reference

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1 reference

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Effect of common B-RAF and N-RAS mutations on global gene expression in melanoma cell lines

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072964

5 July 2018

Circular binary segmentation for the analysis of array-based DNA copy number data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072964

5 July 2018

The International Protein Index: an integrated database for proteomics experiments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072964

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B-RAF is a therapeutic target in melanoma

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072964

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V599EB-RAF is an oncogene in melanocytes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072964

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A census of human cancer genes

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5 July 2018

Cell adhesion and signalling by cadherins and Ig-CAMs in cancer

1 reference

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5 July 2018

High-resolution analysis of DNA copy number using oligonucleotide microarrays

1 reference

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5 July 2018

NRAS and BRAF mutations arise early during melanoma pathogenesis and are preserved throughout tumor progression.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072964

5 July 2018

EphA2 as target of anticancer immunotherapy: identification of HLA-A*0201-restricted epitopes.

1 reference

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5 July 2018

Normalization of cDNA microarray data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072964

5 July 2018

PTEN signaling pathways in melanoma

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072964

5 July 2018

Comprehensive sampling of gene expression in human cell lines with massively parallel signature sequencing

1 reference

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5 July 2018

Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics

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5 July 2018

Mutations of the BRAF gene in human cancer

1 reference

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5 July 2018

The Hedgehog and Wnt signalling pathways in cancer

1 reference

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5 July 2018

Identification of a tumor-specific shared antigen derived from an Eph receptor and presented to CD4 T cells on HLA class II molecules

1 reference

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5 July 2018

The Hallmarks of Cancer

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5 July 2018

KEGG: kyoto encyclopedia of genes and genomes

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5 July 2018

Activation of NK cells and T cells by NKG2D, a receptor for stress-inducible MICA

1 reference

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5 July 2018

Aberrant retention of tyrosinase in the endoplasmic reticulum mediates accelerated degradation of the enzyme and contributes to the dedifferentiated phenotype of amelanotic melanoma cells

1 reference

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5 July 2018

Tumor angiogenesis: therapeutic implications

1 reference

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5 July 2018

Amplification of a gene encoding a p53-associated protein in human sarcomas

1 reference

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5 July 2018

Comparative genomic hybridization for molecular cytogenetic analysis of solid tumors

1 reference

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5 July 2018

Genome-wide loss of heterozygosity and copy number analysis in melanoma using high-density single-nucleotide polymorphism arrays.

1 reference

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21 January 2018

1 reference

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21 January 2018

A screen of the complete protein kinase gene family identifies diverse patterns of somatic mutations in human breast cancer.

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21 January 2018

Subtelomeric 6p deletion: clinical and array-CGH characterization in two patients.

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21 January 2018

Disease stage variation in CD4+ and CD8+ T-cell reactivity to the receptor tyrosine kinase EphA2 in patients with renal cell carcinoma.

1 reference

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29 October 2018

Expression profiling reveals novel pathways in the transformation of melanocytes to melanomas

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nonrandom chromosome changes in malignant melanoma

1 reference

https://pubmed.ncbi.nlm.nih.gov/21494657

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cytogenetic findings in 21 malignant melanomas

1 reference

https://pubmed.ncbi.nlm.nih.gov/21494657

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Antisense targeting of basic fibroblast growth factor and fibroblast growth factor receptor-1 in human melanomas blocks intratumoral angiogenesis and tumor growth

1 reference

https://pubmed.ncbi.nlm.nih.gov/21494657

12 December 2020

based on heuristic

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Major histocompatibility complex class I-related chain A and UL16-binding protein expression on tumor cell lines of different histotypes: analysis of tumor susceptibility to NKG2D-dependent natural killer cell cytotoxicity

1 reference

https://pubmed.ncbi.nlm.nih.gov/21494657

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Loss of PTEN promotes tumor development in malignant melanoma

1 reference

https://pubmed.ncbi.nlm.nih.gov/21494657

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PONE.0018369

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

2011PLoSO...618369V

0 references

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

ResearchGate publication ID

0 references

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