(Q38239862)

31 August 2017

title

The role of chromatin dynamics in immune cell development (English)

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31 August 2017

publication date

1 September 2014

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31 August 2017

published in

Immunological Reviews

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25123274%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

volume

261

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25123274%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25123274%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

page(s)

9-22

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25123274%20AND%20SRC:MED&resulttype=core&format=json

The structure of DNA in the nucleosome core

3 June 2020

cites work

1 reference

Chromatin modifications and their function

21 January 2018

1 reference

Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification

21 January 2018

1 reference

Controlling the double helix

21 January 2018

1 reference

Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells

21 January 2018

1 reference

High-resolution mapping and characterization of open chromatin across the genome

21 January 2018

1 reference

FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin

21 January 2018

1 reference

Dynamic regulation of nucleosome positioning in the human genome

21 January 2018

1 reference

High-resolution profiling of histone methylations in the human genome

21 January 2018

1 reference

A user's guide to the encyclopedia of DNA elements (ENCODE)

21 January 2018

1 reference

An integrated encyclopedia of DNA elements in the human genome

21 January 2018

1 reference

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

21 January 2018

1 reference

The Immunological Genome Project: networks of gene expression in immune cells.

21 January 2018

1 reference

The chromatin structure of specific genes: I. Evidence for higher order domains of defined DNA sequence

21 January 2018

1 reference

The chromatin structure of specific genes: II. Disruption of chromatin structure during gene activity

21 January 2018

1 reference

Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity

21 January 2018

1 reference

Global mapping of protein-DNA interactions in vivo by digital genomic footprinting

21 January 2018

1 reference

The accessible chromatin landscape of the human genome

21 January 2018

1 reference

DNAase footprinting a simple method for the detection of protein-DNA binding specificity

21 January 2018

1 reference

High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells

21 January 2018

1 reference

An expansive human regulatory lexicon encoded in transcription factor footprints

21 January 2018

1 reference

Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data

21 January 2018

1 reference

Discovery of directional and nondirectional pioneer transcription factors by modeling DNase profile magnitude and shape

21 January 2018

1 reference

Refined DNase-seq protocol and data analysis reveals intrinsic bias in transcription factor footprint identification

21 January 2018

1 reference

Internal structure of the chromatin subunit

21 January 2018

1 reference

Redefinition of the cleavage sites of DNase I on the nucleosome core particle.

21 January 2018

1 reference

Controls of nucleosome positioning in the human genome.

21 January 2018

1 reference

DNase-seq predicts regions of rotational nucleosome stability across diverse human cell types

21 January 2018

1 reference

Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome.

21 January 2018

1 reference

Nucleosome positioning and gene regulation: advances through genomics

21 January 2018

1 reference

Regulation of nucleosome landscape and transcription factor targeting at tissue-specific enhancers by BRG1

21 January 2018

1 reference

Determinants of nucleosome organization in primary human cells

21 January 2018

1 reference

Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genes

21 January 2018

1 reference

Discovery and characterization of chromatin states for systematic annotation of the human genome

21 January 2018

1 reference

ChromHMM: automating chromatin-state discovery and characterization

21 January 2018

1 reference

Unsupervised pattern discovery in human chromatin structure through genomic segmentation

21 January 2018

1 reference

Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

21 January 2018

1 reference

Nucleosome dynamics define transcriptional enhancers

21 January 2018

1 reference

Effect of natural genetic variation on enhancer selection and function.

21 January 2018

1 reference

Histone H3K27ac separates active from poised enhancers and predicts developmental state

21 January 2018

1 reference

Polycomb-group proteins in hematopoietic stem cell regulation and hematopoietic neoplasms

21 January 2018

1 reference

Genome-wide analysis of histone methylation reveals chromatin state-based regulation of gene transcription and function of memory CD8+ T cells

21 January 2018

1 reference

Epigenetics in alternative pre-mRNA splicing

21 January 2018

1 reference

Remodeling of the enhancer landscape during macrophage activation is coupled to enhancer transcription.

21 January 2018

1 reference

Dynamic transformations of genome-wide epigenetic marking and transcriptional control establish T cell identity

21 January 2018

1 reference

Dissecting the regulatory architecture of gene expression QTLs

21 January 2018

1 reference

DNase I sensitivity QTLs are a major determinant of human expression variation

21 January 2018

1 reference

Heritable individual-specific and allele-specific chromatin signatures in humans

21 January 2018

1 reference

Identification of genetic variants that affect histone modifications in human cells

21 January 2018

1 reference

Tracking single hematopoietic stem cells in vivo using high-throughput sequencing in conjunction with viral genetic barcoding

21 January 2018

1 reference

Diverse and heritable lineage imprinting of early haematopoietic progenitors.

21 January 2018

1 reference

Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation

21 January 2018

1 reference

Rapid and pervasive changes in genome-wide enhancer usage during mammalian development

21 January 2018

1 reference

Developmental fate and cellular maturity encoded in human regulatory DNA landscapes

21 January 2018

1 reference

Dynamic evolution of the innate immune system in Drosophila.

21 January 2018

1 reference

Interactome maps of mouse gene regulatory domains reveal basic principles of transcriptional regulation.

21 January 2018

1 reference

Epigenetic propagation of CD4 expression is established by the Cd4 proximal enhancer in helper T cells.

21 January 2018

1 reference

MyoD1: a nuclear phosphoprotein requiring a Myc homology region to convert fibroblasts to myoblasts

21 January 2018

1 reference

Opening of compacted chromatin by early developmental transcription factors HNF3 (FoxA) and GATA-4

21 January 2018

1 reference

FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription

21 January 2018

1 reference

An early developmental transcription factor complex that is more stable on nucleosome core particles than on free DNA.

21 January 2018

1 reference

A high-throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals

21 January 2018

1 reference

A validated regulatory network for Th17 cell specification

21 January 2018

1 reference

A global network of transcription factors, involving E2A, EBF1 and Foxo1, that orchestrates B cell fate

21 January 2018

1 reference

Forcing cells to change lineages

21 January 2018

1 reference

C/EBPα poises B cells for rapid reprogramming into induced pluripotent stem cells.

21 January 2018

1 reference

A clonogenic common myeloid progenitor that gives rise to all myeloid lineages

21 January 2018

1 reference

Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration

21 January 2018

1 reference

Myeloid lineage commitment from the hematopoietic stem cell

21 January 2018

1 reference

Multilineage transcriptional priming and determination of alternate hematopoietic cell fates.

21 January 2018

1 reference

Dynamic regulation of PU.1 expression in multipotent hematopoietic progenitors

21 January 2018

1 reference

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities

21 January 2018

1 reference

Identification and characterization of enhancers controlling the inflammatory gene expression program in macrophages.

21 January 2018

1 reference

Commitment to the B-lymphoid lineage depends on the transcription factor Pax5

21 January 2018

1 reference

Conversion of mature B cells into T cells by dedifferentiation to uncommitted progenitors

21 January 2018

1 reference

The basic leucine zipper transcription factor E4BP4 is essential for natural killer cell development.

21 January 2018

1 reference

Foxp3 exploits a pre-existent enhancer landscape for regulatory T cell lineage specification

21 January 2018

1 reference

Deciphering cis-regulatory control in inflammatory cells

21 January 2018

1 reference

Epigenetic priming of a pre-B cell-specific enhancer through binding of Sox2 and Foxd3 at the ESC stage.

21 January 2018

1 reference

Latent enhancers activated by stimulation in differentiated cells

21 January 2018

1 reference

Jmjd3 contributes to the control of gene expression in LPS-activated macrophages

21 January 2018

1 reference

Mechanisms establishing TLR4-responsive activation states of inflammatory response genes.

21 January 2018

1 reference

Short-term memory of danger signals and environmental stimuli in immune cells

21 January 2018

1 reference

Transcriptional control of the inflammatory response

21 January 2018

1 reference

CpG islands and GC content dictate nucleosome depletion in a transcription-independent manner at mammalian promoters

21 January 2018

1 reference

A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters

21 January 2018

1 reference

A unifying model for the selective regulation of inducible transcription by CpG islands and nucleosome remodeling

21 January 2018

1 reference

Maintaining cell identity through global control of genomic organization

21 January 2018

1 reference

Transcription initiation patterns indicate divergent strategies for gene regulation at the chromatin level

21 January 2018

1 reference

Genome-wide analysis of mammalian promoter architecture and evolution

21 January 2018

1 reference

Regulatory T cells in nonlymphoid tissues

21 January 2018

1 reference

Tissue-resident macrophages

21 January 2018

1 reference

Gene-expression profiles and transcriptional regulatory pathways that underlie the identity and diversity of mouse tissue macrophages

21 January 2018

1 reference

Macrophages: Obligate Partners for Tumor Cell Migration, Invasion, and Metastasis

21 January 2018

1 reference

Tumor-associated macrophages (TAM) as major players of the cancer-related inflammation

21 January 2018

1 reference

Natural innate and adaptive immunity to cancer

21 January 2018

1 reference

High-throughput chromatin immunoprecipitation for genome-wide mapping of in vivo protein-DNA interactions and epigenomic states

21 January 2018

1 reference

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

21 January 2018

1 reference

Capturing chromosome conformation

21 January 2018

1 reference

Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements

21 January 2018

1 reference

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

21 January 2018

1 reference

Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture.

21 January 2018

1 reference

Single-cell Hi-C reveals cell-to-cell variability in chromosome structure

21 January 2018

1 reference

Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions

21 January 2018

1 reference

Sequence signatures extracted from proximal promoters can be used to predict distal enhancers

21 January 2018

1 reference

Predicting cell-type-specific gene expression from regions of open chromatin

21 January 2018

1 reference

Uniform, optimal signal processing of mapped deep-sequencing data

21 January 2018

1 reference

Combinatorial patterns of histone acetylations and methylations in the human genome

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1111/IMR.12200

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25123274%20AND%20SRC:MED&resulttype=core&format=json

release_o6xgqw6hn5gfrircx7nj67neue

3 June 2020

Fatcat ID

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Fatcat

https://api.fatcat.wiki/v0/release/o6xgqw6hn5gfrircx7nj67neue

mapped directly with Wikidata item

24 November 2022

based on heuristic

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