(Q38681085)

5 September 2017

title

Protein complex analysis: From raw protein lists to protein interaction networks (English)

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5 September 2017

1

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5 September 2017

Kevin Titeca

2

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Bart Goethals

object named as

Bart Goethals

5

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Kris Laukens

object named as

Kris Laukens

8

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Lennart Martens

6

object named as

Lennart Martens

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5 September 2017

Sven Eyckerman

3

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5 September 2017

Jan Tavernier

4

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5 September 2017

Dirk Valkenborg

7

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5 September 2017

publication date

28 December 2015

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Mass Spectrometry Reviews

5 September 2017

published in

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5 September 2017

volume

36

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5 September 2017

issue

5

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5 September 2017

page(s)

600-614

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InterPreTS: protein interaction prediction through tertiary structure.

5 September 2017

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Targeted tandem affinity purification of PSD-95 recovers core postsynaptic complexes and schizophrenia susceptibility proteins

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A protein complex network of Drosophila melanogaster

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A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality.

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A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic Data

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High-confidence prediction of global interactomes based on genome-wide coevolutionary networks

21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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In silico prediction of physical protein interactions and characterization of interactome orphans

21 January 2018

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The RCSB PDB information portal for structural genomics

21 January 2018

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How good is automated protein docking?

21 January 2018

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Computational methods for Gene Orthology inference

21 January 2018

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A high-throughput approach for measuring temporal changes in the interactome

21 January 2018

1 reference

ProCope--protein complex prediction and evaluation

21 January 2018

1 reference

RNA-Seq Atlas--a reference database for gene expression profiling in normal tissue by next-generation sequencing.

21 January 2018

1 reference

Mapping differential interactomes by affinity purification coupled with data-independent mass spectrometry acquisition

21 January 2018

1 reference

Bioinformatics approaches for the functional interpretation of protein lists: from ontology term enrichment to network analysis

21 January 2018

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Modeling contaminants in AP-MS/MS experiments

21 January 2018

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Docking, scoring, and affinity prediction in CAPRI.

21 January 2018

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Mammalian two-hybrids come of age.

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Heterogeneous data integration by tree-augmented naïve Bayes for protein-protein interactions prediction

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Analysis of the human endogenous coregulator complexome.

21 January 2018

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21 January 2018

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Sequence-based prediction of protein-protein interactions by means of codon usage.

21 January 2018

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A primer to frequent itemset mining for bioinformatics

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Computational and informatics strategies for identification of specific protein interaction partners in affinity purification mass spectrometry experiments

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Finding and evaluating community structure in networks

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Structure of the alpha beta tubulin dimer by electron crystallography

21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

1 reference

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21 January 2018

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Modeling interactome: scale-free or geometric?

21 January 2018

1 reference

Extracting high confidence protein interactions from affinity purification data: at the crossroads

21 January 2018

1 reference

The Pfam protein families database

21 January 2018

1 reference

iRefIndex: a consolidated protein interaction database with provenance

21 January 2018

1 reference

A proteome-scale map of the human interactome network

21 January 2018

1 reference

A promiscuous biotin ligase fusion protein identifies proximal and interacting proteins in mammalian cells

21 January 2018

1 reference

Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analyses

21 January 2018

1 reference

A structural perspective on protein-protein interactions.

21 January 2018

1 reference

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21 January 2018

1 reference

Probabilistic assembly of human protein interaction networks from label-free quantitative proteomics

21 January 2018

1 reference

Protein interaction screening by quantitative immunoprecipitation combined with knockdown (QUICK).

21 January 2018

1 reference

Escherichia coli σ⁷⁰ senses sequence and conformation of the promoter spacer region

21 January 2018

1 reference

Label-free quantitative proteomics and SAINT analysis enable interactome mapping for the human Ser/Thr protein phosphatase 5

21 January 2018

1 reference

The Negatome database: a reference set of non-interacting protein pairs

21 January 2018

1 reference

Prediction of protein-protein interactions by docking methods.

21 January 2018

1 reference

Stoichiometry of chromatin-associated protein complexes revealed by label-free quantitative mass spectrometry-based proteomics

21 January 2018

1 reference

Cytoscape 2.8: new features for data integration and network visualization

21 January 2018

1 reference

Defining the human deubiquitinating enzyme interaction landscape

21 January 2018

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21 January 2018

1 reference

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21 January 2018

1 reference

A gene atlas of the mouse and human protein-encoding transcriptomes

21 January 2018

1 reference

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21 January 2018

1 reference

Two-hybrid technologies in proteomics research

21 January 2018

1 reference

Conserved clusters of functionally related genes in two bacterial genomes.

21 January 2018

1 reference

An in vivo map of the yeast protein interactome

21 January 2018

1 reference

SAINTexpress: improvements and additional features in Significance Analysis of INTeractome software

21 January 2018

1 reference

Structural basis of protein phosphatase 1 regulation

21 January 2018

1 reference

SFINX: Straightforward Filtering Index for Affinity Purification-Mass Spectrometry Data Analysis

21 January 2018

1 reference

SwarmDock: a server for flexible protein-protein docking.

21 January 2018

1 reference

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21 January 2018

1 reference

Towards a knowledge-based Human Protein Atlas

21 January 2018

1 reference

Information-driven protein-DNA docking using HADDOCK: it is a matter of flexibility

21 January 2018

1 reference

Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana

21 January 2018

1 reference

Quantitative dissection and stoichiometry determination of the human SET1/MLL histone methyltransferase complexes

21 January 2018

1 reference

Interlaboratory reproducibility of large-scale human protein-complex analysis by standardized AP-MS

21 January 2018

1 reference

PeptideShaker enables reanalysis of MS-derived proteomics data sets.

21 January 2018

1 reference

qcML: an exchange format for quality control metrics from mass spectrometry experiments

21 January 2018

1 reference

Mass spectrometry supported determination of protein complex structure

21 January 2018

1 reference

Alternative isoform regulation in human tissue transcriptomes

21 January 2018

1 reference

Towards the prediction of protein interaction partners using physical docking

21 January 2018

1 reference

TRANSFAC: a database on transcription factors and their DNA binding sites

21 January 2018

1 reference

Topology and weights in a protein domain interaction network--a novel way to predict protein interactions

21 January 2018

1 reference

Sequence-based prediction of protein-protein interactions by means of rotation forest and autocorrelation descriptor.

21 January 2018

1 reference

GPS 2.0, a tool to predict kinase-specific phosphorylation sites in hierarchy

21 January 2018

1 reference

Network motifs in integrated cellular networks of transcription-regulation and protein-protein interaction

21 January 2018

1 reference

Predicting interactions in protein networks by completing defective cliques.

21 January 2018

1 reference

DroID: the Drosophila Interactions Database, a comprehensive resource for annotated gene and protein interactions

21 January 2018

1 reference

Predicting protein-protein interactions in unbalanced data using the primary structure of proteins

21 January 2018

1 reference

From pull-down data to protein interaction networks and complexes with biological relevance

21 January 2018

1 reference

Structure-based prediction of protein–protein interactions on a genome-wide scale

21 January 2018

1 reference

Bridging structural biology and genomics: assessing protein interaction data with known complexes

21 January 2018

1 reference

The 4th meeting on the Critical Assessment of Predicted Interaction (CAPRI) held at the Mare Nostrum, Barcelona

21 January 2018

1 reference

Probabilistic model of the human protein-protein interaction network

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1002/MAS.21485

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5 September 2017

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