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Epistasis in protein evolution
scientific article published on 2 February 2016
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scholarly article
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Europe PubMed Central
PMCID
4918427
retrieved
5 September 2017
review article
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Europe PubMed Central
title
Epistasis in protein evolution
(English)
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stated in
Europe PubMed Central
PMCID
4918427
retrieved
5 September 2017
main subject
protein evolution
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author name string
Tyler N Starr
series ordinal
1
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stated in
Europe PubMed Central
PMCID
4918427
retrieved
5 September 2017
Joseph W Thornton
series ordinal
2
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Europe PubMed Central
PMCID
4918427
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5 September 2017
publication date
2 February 2016
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Europe PubMed Central
PMCID
4918427
retrieved
5 September 2017
published in
Protein Science
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stated in
Europe PubMed Central
PMCID
4918427
retrieved
5 September 2017
volume
25
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stated in
Europe PubMed Central
PMCID
4918427
retrieved
5 September 2017
issue
7
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Europe PubMed Central
PMCID
4918427
retrieved
5 September 2017
page(s)
1204-1218
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Europe PubMed Central
PMCID
4918427
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5 September 2017
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Coevolutionary Landscape Inference and the Context-Dependence of Mutations in Beta-Lactamase TEM-1.
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Why human disease-associated residues appear as the wild-type in other species: genome-scale structural evidence for the compensation hypothesis.
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Vestigialization of an Allosteric Switch: Genetic and Structural Mechanisms for the Evolution of Constitutive Activity in a Steroid Hormone Receptor
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6 September 2017
Dobzhansky-Muller incompatibilities in protein evolution
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A secondary drug resistance mutation of TEM-1 beta-lactamase that suppresses misfolding and aggregation
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A natural polymorphism in beta-lactamase is a global suppressor
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Negative Epistasis and Evolvability in TEM-1 β-Lactamase--The Thin Line between an Enzyme's Conformational Freedom and Disorder
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918427
retrieved
23 June 2018
A comprehensive biophysical description of pairwise epistasis throughout an entire protein domain
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918427
retrieved
23 June 2018
Fitness conferred by replaced amino acids declines with time
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918427
retrieved
23 June 2018
Evolution. Systematic humanization of yeast genes reveals conserved functions and genetic modularity
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918427
retrieved
31 August 2018
A model of substitution trajectories in sequence space and long-term protein evolution.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918427
retrieved
31 August 2018
Selection biases the prevalence and type of epistasis along adaptive trajectories
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918427
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31 August 2018
The role of epistasis in protein evolution.
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918427
retrieved
31 August 2018
Epistasis as the primary factor in molecular evolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918427
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31 August 2018
Regulatory evolution through divergence of a phosphoswitch in the transcription factor CEBPB.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918427
retrieved
31 August 2018
Compensated pathogenic deviations: analysis of structural effects.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918427
retrieved
31 August 2018
Assessing computational methods for predicting protein stability upon mutation: good on average but not in the details.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918427
retrieved
31 August 2018
Neutralism and selectionism: a network-based reconciliation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918427
retrieved
31 August 2018
Compensated deleterious mutations in insect genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4918427
retrieved
31 August 2018
The Context-Dependence of Mutations: A Linkage of Formalisms
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/26833806
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1002/PRO.2897
1 reference
stated in
Europe PubMed Central
PMCID
4918427
retrieved
5 September 2017
PMCID
4918427
1 reference
stated in
Europe PubMed Central
PMCID
4918427
retrieved
5 September 2017
PubMed ID
26833806
1 reference
stated in
Europe PubMed Central
PMCID
4918427
retrieved
5 September 2017
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