(Q49864965)

22 February 2018

title

Building and decoding ubiquitin chains for mitophagy. (English)

1 reference

22 February 2018

1

Harper JW

1 reference

22 February 2018

A. Ordureau

series ordinal

2

object named as

Ordureau A

1 reference

22 February 2018

J.M. Heo

series ordinal

3

object named as

Heo JM

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22 February 2018

language of work or name

English

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publication date

1 January 2018

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22 February 2018

Nature Reviews Molecular Cell Biology

published in

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22 February 2018

volume

19

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22 February 2018

issue

2

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22 February 2018

page(s)

93-108

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22 February 2018

https://scigraph.springernature.com/pub.10.1038/nrm.2017.129

exact match

0 references

cites work

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PINK1 is selectively stabilized on impaired mitochondria to activate Parkin

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Drosophila pink1 is required for mitochondrial function and interacts genetically with parkin

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Mitochondrial dysfunction in Drosophila PINK1 mutants is complemented by parkin

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Parkin is recruited selectively to impaired mitochondria and promotes their autophagy

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Mutations of optineurin in amyotrophic lateral sclerosis

31 March 2020

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Exome sequencing in amyotrophic lateral sclerosis identifies risk genes and pathways

31 March 2020

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Haploinsufficiency of TBK1 causes familial ALS and fronto-temporal dementia

31 March 2020

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Common Molecular Pathways in Amyotrophic Lateral Sclerosis and Frontotemporal Dementia

31 March 2020

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Nix is a selective autophagy receptor for mitochondrial clearance

31 March 2020

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Mitophagy defects arising from BNip3 loss promote mammary tumor progression to metastasis

31 March 2020

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MicroRNA-137 is a novel hypoxia-responsive microRNA that inhibits mitophagy via regulation of two mitophagy receptors FUNDC1 and NIX

31 March 2020

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Self-renewal of a purified Tie2+ hematopoietic stem cell population relies on mitochondrial clearance.

31 March 2020

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Mitochondrial dysfunction in cancer

31 March 2020

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Mitochondrial autophagy: Origins, significance, and role of BNIP3 and NIX

31 March 2020

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The ubiquitin ligase parkin mediates resistance to intracellular pathogens

31 March 2020

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Unconventional PINK1 localization to the outer membrane of depolarized mitochondria drives Parkin recruitment

31 March 2020

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Mitochondrial membrane potential regulates PINK1 import and proteolytic destabilization by PARL

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRM.2017.129

Mitochondrial processing peptidase regulates PINK1 processing, import and Parkin recruitment

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRM.2017.129

PINK1 is degraded through the N-end rule pathway

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRM.2017.129

Role of PINK1 binding to the TOM complex and alternate intracellular membranes in recruitment and activation of the E3 ligase Parkin

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRM.2017.129

Optineurin is an autophagy receptor for damaged mitochondria in parkin-mediated mitophagy that is disrupted by an ALS-linked mutation

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRM.2017.129

The ubiquitin kinase PINK1 recruits autophagy receptors to induce mitophagy

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRM.2017.129

The PINK1-PARKIN Mitochondrial Ubiquitylation Pathway Drives a Program of OPTN/NDP52 Recruitment and TBK1 Activation to Promote Mitophagy

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRM.2017.129

Phosphorylation of OPTN by TBK1 enhances its binding to Ub chains and promotes selective autophagy of damaged mitochondria

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRM.2017.129

Mechanisms of mitophagy: PINK1, Parkin, USP30 and beyond.

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRM.2017.129

Autoregulation of Parkin activity through its ubiquitin-like domain

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRM.2017.129

Structure of the human Parkin ligase domain in an autoinhibited state

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRM.2017.129

Structure of parkin reveals mechanisms for ubiquitin ligase activation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Structure and function of Parkin E3 ubiquitin ligase reveals aspects of RING and HECT ligases

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Targeting HECT-type E3 ligases - insights from catalysis, regulation and inhibitors.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

UBCH7 reactivity profile reveals parkin and HHARI to be RING/HECT hybrids

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Structure-guided mutagenesis reveals a hierarchical mechanism of Parkin activation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Phosphorylation of parkin by Parkinson disease-linked kinase PINK1 activates parkin E3 ligase function and NF-kappaB signaling

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

PINK1 is activated by mitochondrial membrane potential depolarization and stimulates Parkin E3 ligase activity by phosphorylating Serine 65

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

PINK1-mediated phosphorylation of the Parkin ubiquitin-like domain primes mitochondrial translocation of Parkin and regulates mitophagy

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Quantitative proteomics reveal a feedforward mechanism for mitochondrial PARKIN translocation and ubiquitin chain synthesis.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Mechanism of phospho-ubiquitin-induced PARKIN activation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Structure of phosphorylated UBL domain and insights into PINK1-orchestrated parkin activation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Phosphorylation by PINK1 releases the UBL domain and initializes the conformational opening of the E3 ubiquitin ligase Parkin

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Parkin is activated by PINK1-dependent phosphorylation of ubiquitin at Ser65

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Ubiquitin is phosphorylated by PINK1 to activate parkin

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

PINK1 phosphorylates ubiquitin to activate Parkin E3 ubiquitin ligase activity

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Ubiquitin Ser65 phosphorylation affects ubiquitin structure, chain assembly and hydrolysis

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Phosphorylated ubiquitin chain is the genuine Parkin receptor.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

A Ubl/ubiquitin switch in the activation of Parkin

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Defining roles of PARKIN and ubiquitin phosphorylation by PINK1 in mitochondrial quality control using a ubiquitin replacement strategy.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Structure of PINK1 in complex with its substrate ubiquitin.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

An invisible ubiquitin conformation is required for efficient phosphorylation by PINK1.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Structure of PINK1 and mechanisms of Parkinson's disease-associated mutations.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Site-specific Interaction Mapping of Phosphorylated Ubiquitin to Uncover Parkin Activation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Disruption of the autoinhibited state primes the E3 ligase parkin for activation and catalysis.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Binding to serine 65-phosphorylated ubiquitin primes Parkin for optimal PINK1-dependent phosphorylation and activation.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Parkin-phosphoubiquitin complex reveals cryptic ubiquitin-binding site required for RBR ligase activity

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Dual Function of Phosphoubiquitin in E3 Activation of Parkin.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Structure of a HOIP/E2~ubiquitin complex reveals RBR E3 ligase mechanism and regulation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

The PINK1/Parkin-mediated mitophagy is compromised by PD-associated mutations

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

PINK1 stabilized by mitochondrial depolarization recruits Parkin to damaged mitochondria and activates latent Parkin for mitophagy

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

PINK1-dependent recruitment of Parkin to mitochondria in mitophagy

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Broad activation of the ubiquitin-proteasome system by Parkin is critical for mitophagy

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

p62/SQSTM1 is required for Parkin-induced mitochondrial clustering but not mitophagy; VDAC1 is dispensable for both

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

PINK1/Parkin-mediated mitophagy is dependent on VDAC1 and p62/SQSTM1

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

The mitochondrial deubiquitinase USP30 opposes parkin-mediated mitophagy

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Highly Multiplexed Quantitative Mass Spectrometry Analysis of Ubiquitylomes.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Parkin mediates proteasome-dependent protein degradation and rupture of the outer mitochondrial membrane

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Atypical ubiquitylation - the unexplored world of polyubiquitin beyond Lys48 and Lys63 linkages.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

USP30 and parkin homeostatically regulate atypical ubiquitin chains on mitochondria

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

UbMES and UbFluor: Novel probes for ring-between-ring (RBR) E3 ubiquitin ligase PARKIN.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

PINK1 drives Parkin self-association and HECT-like E3 activity upstream of mitochondrial binding

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Parkin mitochondrial translocation is achieved through a novel catalytic activity coupled mechanism

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Probes of ubiquitin E3 ligases enable systematic dissection of parkin activation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

PINK1-mediated phosphorylation of Parkin boosts Parkin activity in Drosophila

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Ubiquitin Linkage-Specific Affimers Reveal Insights into K6-Linked Ubiquitin Signaling

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Mitochondrial fission facilitates the selective mitophagy of protein aggregates.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Structural and Functional Impact of Parkinson Disease-Associated Mutations in the E3 Ubiquitin Ligase Parkin

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Cargo recognition and trafficking in selective autophagy

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

NF-κB Restricts Inflammasome Activation via Elimination of Damaged Mitochondria

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Elimination of paternal mitochondria in mouse embryos occurs through autophagic degradation dependent on PARKIN and MUL1.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Polyubiquitin binding to optineurin is required for optimal activation of TANK-binding kinase 1 and production of interferon β.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

NEMO specifically recognizes K63-linked poly-ubiquitin chains through a new bipartite ubiquitin-binding domain

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Structural Basis for Recognition of Diubiquitins by NEMO

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Phosphorylation of the autophagy receptor optineurin restricts Salmonella growth

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

The TBK1 adaptor and autophagy receptor NDP52 restricts the proliferation of ubiquitin-coated bacteria

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Recruitment of TBK1 to cytosol-invading Salmonella induces WIPI2-dependent antibacterial autophagy

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

TBK-1 Promotes Autophagy-Mediated Antimicrobial Defense by Controlling Autophagosome Maturation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Dynamic recruitment and activation of ALS-associated TBK1 with its target optineurin are required for efficient mitophagy

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Serine 403 phosphorylation of p62/SQSTM1 regulates selective autophagic clearance of ubiquitinated proteins.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Ubiquitin-Dependent And Independent Signals In Selective Autophagy

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Atg8 family LC3/GABARAP proteins are crucial for autophagosome-lysosome fusion but not autophagosome formation during PINK1/Parkin mitophagy and starvation.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Discovery of Atg5/Atg7-independent alternative macroautophagy

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

The ATG conjugation systems are important for degradation of the inner autophagosomal membrane.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Systematic analysis of human cells lacking ATG8 proteins uncovers roles for GABARAPs and the CCZ1/MON1 regulator C18orf8/RMC1 in macro and selective autophagic flux

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Prohibitin 2 Is an Inner Mitochondrial Membrane Mitophagy Receptor.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Parkinson's Disease-Related Proteins PINK1 and Parkin Repress Mitochondrial Antigen Presentation.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Parkin deficiency increases vulnerability to inflammation-related nigral degeneration

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Phosphorylation of ubiquitin at Ser65 affects its polymerization, targets, and proteome-wide turnover

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Accumulation of the authentic parkin substrate aminoacyl-tRNA synthetase cofactor, p38/JTV-1, leads to catecholaminergic cell death.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Identification of far upstream element-binding protein-1 as an authentic Parkin substrate

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Parkin mono-ubiquitinates Bcl-2 and regulates autophagy

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

The ubiquitin-interacting motif protein, S5a, is ubiquitinated by all types of ubiquitin ligases by a mechanism different from typical substrate recognition

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Programmed cell death-2 isoform1 is ubiquitinated by parkin and increased in the substantia nigra of patients with autosomal recessive Parkinson's disease

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Parkin-mediated monoubiquitination of the PDZ protein PICK1 regulates the activity of acid-sensing ion channels

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

PARIS (ZNF746) repression of PGC-1α contributes to neurodegeneration in Parkinson's disease

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Endogenous Parkin Preserves Dopaminergic Substantia Nigral Neurons following Mitochondrial DNA Mutagenic Stress

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

(Patho-)physiological relevance of PINK1-dependent ubiquitin phosphorylation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

MUL1 acts in parallel to the PINK1/parkin pathway in regulating mitofusin and compensates for loss of PINK1/parkin

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

mito-QC illuminates mitophagy and mitochondrial architecture in vivo

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Measuring In Vivo Mitophagy

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Paternal mitochondrial destruction after fertilization is mediated by a common endocytic and autophagic pathway in Drosophila.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Degradation of paternal mitochondria by fertilization-triggered autophagy in C. elegans embryos.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Autophagy and ubiquitin-proteasome system contribute to sperm mitophagy after mammalian fertilization

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Mitochondrial dynamics and inheritance during cell division, development and disease

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

NIX is required for programmed mitochondrial clearance during reticulocyte maturation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Phosphorylation of the mitochondrial autophagy receptor Nix enhances its interaction with LC3 proteins.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

FKBP8 recruits LC3A to mediate Parkin-independent mitophagy.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Mitochondrial outer-membrane protein FUNDC1 mediates hypoxia-induced mitophagy in mammalian cells

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Mitochondrial E3 ligase MARCH5 regulates FUNDC1 to fine-tune hypoxic mitophagy

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

The deubiquitinase USP15 antagonizes Parkin-mediated mitochondrial ubiquitination and mitophagy

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

USP8 regulates mitophagy by removing K6-linked ubiquitin conjugates from parkin

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Deubiquitinating enzymes regulate PARK2-mediated mitophagy

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Mechanism and regulation of the Lys6-selective deubiquitinase USP30.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Structural basis for specific cleavage of Lys6-linked polyubiquitin chains by USP30.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

An essential domain of an early-diverged RNA polymerase II functions to accurately decode a primitive chromatin landscape

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

The autophagosome: origins unknown, biogenesis complex

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Dynamic regulation of macroautophagy by distinctive ubiquitin-like proteins

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Atomistic autophagy: the structures of cellular self-digestion

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM.2017.129

Parkin and PINK1 function in a vesicular trafficking pathway regulating mitochondrial quality control

31 March 2020

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29358684

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

USP15 regulates dynamic protein-protein interactions of the spliceosome through deubiquitination of PRP31.

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29358684

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NRM.2017.129

1 reference

22 February 2018

Dimensions Publication ID

1100562217

0 references

1 reference

22 February 2018