(Q58710723)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30137508%20AND%20SRC:MED&resulttype=core&format=json

19 April 2020

title

Pushing the limits of de novo genome assembly for complex prokaryotic genomes harboring very long, near identical repeats (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30137508%20AND%20SRC:MED&resulttype=core&format=json

19 April 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30137508%20AND%20SRC:MED&resulttype=core&format=json

19 April 2020

Ralph Schlapbach

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30137508%20AND%20SRC:MED&resulttype=core&format=json

19 April 2020

Mitja Remus-Emsermann

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30137508%20AND%20SRC:MED&resulttype=core&format=json

19 April 2020

Christian H. Ahrens

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30137508%20AND%20SRC:MED&resulttype=core&format=json

19 April 2020

author name string

Daniel Frei

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30137508%20AND%20SRC:MED&resulttype=core&format=json

19 April 2020

Andrea Patrignani

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30137508%20AND%20SRC:MED&resulttype=core&format=json

19 April 2020

Jürg E Frey

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30137508%20AND%20SRC:MED&resulttype=core&format=json

19 April 2020

language of work or name

English

0 references

publication date

1 September 2018

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30137508%20AND%20SRC:MED&resulttype=core&format=json

19 April 2020

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30137508%20AND%20SRC:MED&resulttype=core&format=json

19 April 2020

volume

46

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30137508%20AND%20SRC:MED&resulttype=core&format=json

19 April 2020

issue

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30137508%20AND%20SRC:MED&resulttype=core&format=json

19 April 2020

page(s)

8953-8965

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30137508%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

19 April 2020

copyright license

start time

23 August 2018

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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30 November 2018

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Comparative Genomics of Completely Sequenced Lactobacillus helveticus Genomes Provides Insights into Strain-Specific Genes and Resolves Metagenomics Data Down to the Strain Level.

30 November 2018

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30 November 2018

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30 November 2018

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30 November 2018

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30 November 2018

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30 November 2018

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Comprehensive comparison of Pacific Biosciences and Oxford Nanopore Technologies and their applications to transcriptome analysis.

30 November 2018

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A Case Study into Microbial Genome Assembly Gap Sequences and Finishing Strategies

30 November 2018

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Dynamics of culturable mesophilic bacterial communities of three fresh herbs and their production environment

30 November 2018

1 reference

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Elucidation of quantitative structural diversity of remarkable rearrangement regions, shufflons, in IncI2 plasmids

30 November 2018

1 reference

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Complete genome sequence of Pseudomonas citronellolis P3B5, a candidate for microbial phyllo-remediation of hydrocarbon-contaminated sites.

30 November 2018

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Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation

30 November 2018

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Detecting DNA cytosine methylation using nanopore sequencing.

30 November 2018

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Fast and accurate de novo genome assembly from long uncorrected reads.

30 November 2018

1 reference

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Genomic analysis of globally diverse Mycobacterium tuberculosis strains provides insights into the emergence and spread of multidrug resistance

30 November 2018

1 reference

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Genome Sequence of Pseudomonas koreensis CRS05-R5, an Antagonistic Bacterium Isolated from Rice Paddy Field

30 November 2018

1 reference

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bcgTree: automatized phylogenetic tree building from bacterial core genomes

30 November 2018

1 reference

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NCBI prokaryotic genome annotation pipeline

30 November 2018

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Coming of age: ten years of next-generation sequencing technologies

30 November 2018

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Fast and sensitive mapping of nanopore sequencing reads with GraphMap

30 November 2018

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A complete bacterial genome assembled de novo using only nanopore sequencing data

30 November 2018

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A new antibiotic kills pathogens without detectable resistance

30 November 2018

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One chromosome, one contig: complete microbial genomes from long-read sequencing and assembly

30 November 2018

1 reference

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The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification.

30 November 2018

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Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains

30 November 2018

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30 November 2018

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Complete Genome Sequence of the p-Nitrophenol-Degrading Bacterium Pseudomonas putida DLL-E4.

30 November 2018

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Comparative genome analysis of Pseudomonas knackmussii B13, the first bacterium known to degrade chloroaromatic compounds

30 November 2018

1 reference

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Chromosomal DNA deletion confers phage resistance to Pseudomonas aeruginosa

30 November 2018

1 reference

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The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).

30 November 2018

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Reducing assembly complexity of microbial genomes with single-molecule sequencing

30 November 2018

1 reference

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Genomic analysis of the Kiwifruit pathogen Pseudomonas syringae pv. actinidiae provides insight into the origins of an emergent plant disease

30 November 2018

1 reference

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Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158609

QUAST: quality assessment tool for genome assemblies

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158609

Comparative genomics of plant-associated Pseudomonas spp.: insights into diversity and inheritance of traits involved in multitrophic interactions

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158609

The limitations of draft assemblies for understanding prokaryotic adaptation and evolution.

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158609

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158609

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158609

Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158609

Deciphering the rhizosphere microbiome for disease-suppressive bacteria

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158609

Genome sequence of Kitasatospora setae NBRC 14216T: an evolutionary snapshot of the family Streptomycetaceae.

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158609

progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158609

BEDTools: a flexible suite of utilities for comparing genomic features

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158609

Circos: an information aesthetic for comparative genomics

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158609

The Sequence Alignment/Map format and SAMtools

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158609

Real-time DNA sequencing from single polymerase molecules

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158609

The UvrD helicase and its modulation by the mismatch repair protein MutL.

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158609

Structure-specific DNA binding and bipolar helicase activities of PcrA.

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158609

WebLogo: A Sequence Logo Generator

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158609

MUSCLE: multiple sequence alignment with high accuracy and high throughput

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158609

Versatile and open software for comparing large genomes

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158609

Pseudomonas koreensis sp. nov., Pseudomonas umsongensis sp. nov. and Pseudomonas jinjuensis sp. nov., novel species from farm soils in Korea

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158609

The value of complete microbial genome sequencing (you get what you pay for).

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158609

Shufflons: multiple inversion systems and integrons

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6158609

The terminal proteins of linear Streptomyces chromosomes and plasmids: a novel class of replication priming proteins

30 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/30137508

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKY726

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30137508%20AND%20SRC:MED&resulttype=core&format=json

19 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30137508%20AND%20SRC:MED&resulttype=core&format=json

19 April 2020

PubMed publication ID

30137508

1 reference