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RNA-Seq technology and its application in fish transcriptomics
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scholarly article
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stated in
PubMed
title
RNA-Seq technology and its application in fish transcriptomics
(English)
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stated in
PubMed
main subject
transcriptome
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RNA sequencing
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based on heuristic
inferred from title
fish
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transcriptomics
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based on heuristic
inferred from title
RNA-Seq
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based on heuristic
inferred from title
author name string
Xi Qian
series ordinal
1
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stated in
Crossref
Yi Ba
series ordinal
2
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stated in
Crossref
Qianfeng Zhuang
series ordinal
3
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stated in
Crossref
Guofang Zhong
series ordinal
4
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stated in
Crossref
language of work or name
English
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stated in
PubMed
publication date
February 2014
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stated in
PubMed
published in
OMICS A Journal of Integrative Biology
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stated in
PubMed
volume
18
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stated in
PubMed
issue
2
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PubMed
page(s)
98-110
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PubMed
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
IsoformEx: isoform level gene expression estimation using weighted non-negative least squares from mRNA-Seq data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
Advances in bacterial transcriptome and transposon insertion-site profiling using second-generation sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
Computational methods for transcriptome annotation and quantification using RNA-seq
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
Landscape of next-generation sequencing technologies.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
Transcriptomic assessment of resistance to effects of an aryl hydrocarbon receptor (AHR) agonist in embryos of Atlantic killifish (Fundulus heteroclitus) from a marine Superfund site
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
The zebrafish transcriptome during early development
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
Sequencing and characterization of the guppy (Poecilia reticulata) transcriptome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
RNA-Seq analysis in mutant zebrafish reveals role of U1C protein in alternative splicing regulation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
Identification of transcriptome SNPs between Xiphophorus lines and species for assessing allele specific gene expression within F₁ interspecies hybrids
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
Transcriptome profiling using single-molecule direct RNA sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
Improving RNA-Seq expression estimates by correcting for fragment bias
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
Generation of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP array
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
Promise and progress in environmental genomics: a status report on the applications of gene expression-based microarray studies in ecologically relevant fish species
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
De novo assembly and analysis of RNA-seq data.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
A window into third-generation sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
Deep sequencing of the innate immune transcriptomic response of zebrafish embryos to Salmonella infection
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
Deep sequencing-based transcriptome profiling analysis of bacteria-challenged Lateolabrax japonicus reveals insight into the immune-relevant genes in marine fish
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
baySeq: empirical Bayesian methods for identifying differential expression in sequence count data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
Uncovering the complexity of transcriptomes with RNA-Seq.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
Tracing the derivation of embryonic stem cells from the inner cell mass by single-cell RNA-Seq analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
A comparison of massively parallel nucleotide sequencing with oligonucleotide microarrays for global transcription profiling
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
Digital transcriptome profiling from attomole-level RNA samples
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
Serial analysis of gene expression in the skeletal muscles of zebrafish fed with a methylmercury-contaminated diet
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
The complex eukaryotic transcriptome: unexpected pervasive transcription and novel small RNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
RNA-seq: from technology to biology
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
Targeted next-generation sequencing of a cancer transcriptome enhances detection of sequence variants and novel fusion transcripts
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
The plasticity of the mammalian transcriptome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
Applications of new sequencing technologies for transcriptome analysis.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
Advances in the identification and analysis of allele-specific expression.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
Next-generation DNA sequencing techniques
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
Estimating accuracy of RNA-Seq and microarrays with proteomics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
RNA-Seq-quantitative measurement of expression through massively parallel RNA-sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
Statistical inferences for isoform expression in RNA-Seq
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
The antisense transcriptomes of human cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
Polony multiplex analysis of gene expression (PMAGE) in mouse hypertrophic cardiomyopathy
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
Microarray studies of gene expression in fish
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
Molecular phenotype of zebrafish ovarian follicle by serial analysis of gene expression and proteomic profiling, and comparison with the transcriptomes of other animals
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
SuperSAGE.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 September 2017
Id2a functions to limit Notch pathway activity and thereby influence the transition from proliferation to differentiation of retinoblasts during zebrafish retinogenesis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
31 May 2018
Transcriptomic signatures of attachment, NF-κB suppression and IFN stimulation in the catfish gill following columnaris bacterial infection
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
31 May 2018
Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
31 May 2018
A Ligase-Mediated Gene Detection Technique
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
31 May 2018
Molecular responses to toxicological stressors: profiling microRNAs in wild Atlantic salmon (Salmo salar) exposed to acidic aluminum-rich water
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 November 2018
Putative roles for a rhamnose binding lectin in Flavobacterium columnare pathogenesis in channel catfish Ictalurus punctatus.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 November 2018
Validation of two ribosomal RNA removal methods for microbial metatranscriptomics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 November 2018
A genetic basis for the phenotypic differentiation between siscowet and lean lake trout (Salvelinus namaycush).
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3920896
retrieved
28 November 2018
The transcriptomics of sympatric dwarf and normal lake whitefish (Coregonus clupeaformis spp., Salmonidae) divergence as revealed by next-generation sequencing.
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/24380445
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Interrogating the transcriptome
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/24380445
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Fidelity of enzymatic ligation for DNA computing
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/24380445
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Characterization of European sea bass transcripts by RNA SEQ after oral vaccine against V. anguillarum
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/24380445
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Effects of chronic metal exposure on wild fish populations revealed by high-throughput cDNA sequencing
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/24380445
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1089/OMI.2013.0110
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
830910
OpenCitations bibliographic resource ID
830910
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
830910
PMCID
3920896
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
830910
PubMed ID
24380445
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
830910
ResearchGate publication ID
259529596
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