(Q38980350)

8 September 2017

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title

Genetic drift, selection and the evolution of the mutation rate (English)

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8 September 2017

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Matthew S Ackerman

2

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Hongan Long

object named as

Hongan Long

4

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author name string

Michael Lynch

1

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8 September 2017

Jean-Francois Gout

3

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8 September 2017

Way Sung

5

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8 September 2017

W Kelley Thomas

6

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8 September 2017

Patricia L Foster

7

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8 September 2017

publication date

1 October 2016

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8 September 2017

published in

Nature Reviews Genetics

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8 September 2017

volume

17

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8 September 2017

issue

11

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8 September 2017

page(s)

704-714

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https://scigraph.springernature.com/pub.10.1038/nrg.2016.104

8 September 2017

exact match

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cites work

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Evidence of non-random mutation rates suggests an evolutionary risk management strategy.

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Accelerated gene evolution through replication-transcription conflicts

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Stress-induced mutagenesis and complex adaptation.

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The cellular, developmental and population-genetic determinants of mutation-rate evolution

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The lower bound to the evolution of mutation rates

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Evaluating evolutionary models of stress-induced mutagenesis in bacteria

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The dynamics of infinitesimally rare alleles, applied to the evolution of mutation rates and the expression of deleterious mutations

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PERSPECTIVE: SPONTANEOUS DELETERIOUS MUTATION.

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Mutation rate variation in multicellular eukaryotes: causes and consequences

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The distribution of fitness effects of new mutations

31 March 2020

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The rate and effects of spontaneous mutation on fitness traits in the social amoeba, Dictyostelium discoideum

31 March 2020

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Evolutionary layering and the limits to cellular perfection

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRG.2016.104

The evolution of mutation rates: separating causes from consequences

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRG.2016.104

The Evolution of Mutation Rate in Finite Asexual Populations

31 March 2020

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Studies on the biochemical basis of spontaneous mutation. II. The incorporation of a base and its analogue into DNA by wild-type, mutator and antimutator DNA polymerases

31 March 2020

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Highly tolerated amino acid substitutions increase the fidelity of Escherichia coli DNA polymerase I.

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRG.2016.104

The enhanced DNA replication fidelity of a mutant herpes simplex virus type 1 DNA polymerase is mediated by an improved nucleotide selectivity and reduced mismatch extension ability

31 March 2020

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Optimization of DNA polymerase mutation rates during bacterial evolution

31 March 2020

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Evolutionary meandering of intermolecular interactions along the drift barrier

31 March 2020

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The diverse and dynamic structure of bacterial genomes

31 March 2020

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Quantitative relationships for specific growth rates and macromolecular compositions of Mycobacterium tuberculosis, Streptomyces coelicolor A3(2) and Escherichia coli B/r: an integrative theoretical approach

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Deletional bias and the evolution of bacterial genomes

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No evidence for elemental-based streamlining of prokaryotic genomes

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Evolution of the mutation rate

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A constant rate of spontaneous mutation in DNA-based microbes

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Determining mutation rates in bacterial populations

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Estimate of the genomic mutation rate deleterious to overall fitness in E. coli.

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Estimating the human mutation rate using autozygosity in a founder population

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Rate of de novo mutations and the importance of father's age to disease risk

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Nonhuman genetics. Strong male bias drives germline mutation in chimpanzees

31 March 2020

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Estimation of the spontaneous mutation rate per nucleotide site in a Drosophila melanogaster full-sib family.

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRG.2016.104

Estimation of the spontaneous mutation rate in Heliconius melpomene

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Drift-barrier hypothesis and mutation-rate evolution.

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The proteomic constraint and its role in molecular evolution

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Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

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Ubiquitous selective constraints in the Drosophila genome revealed by a genome-wide interspecies comparison

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Rates and fitness consequences of new mutations in humans

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A high-resolution map of human evolutionary constraint using 29 mammals

31 March 2020

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8.2% of the Human genome is constrained: variation in rates of turnover across functional element classes in the human lineage

31 March 2020

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31 March 2020

Evolution-driving genes

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Second-order selection in bacterial evolution: selection acting on mutation and recombination rates in the course of adaptation

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRG.2016.104

Evolvability is a selectable trait

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRG.2016.104

Stress-induced mutagenesis in bacteria.

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRG.2016.104

Complete genetic linkage can subvert natural selection

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRG.2016.104

Genomic mutation rates that neutralize adaptive evolution and natural selection

31 March 2020

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Direct estimates of human per nucleotide mutation rates at 20 loci causing Mendelian diseases

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRG.2016.104

Rate, molecular spectrum, and consequences of human mutation

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRG.2016.104

The origins of eukaryotic gene structure

31 March 2020

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Evolution of the Insertion-Deletion Mutation Rate Across the Tree of Life.

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRG.2016.104

Genome-wide linkage-disequilibrium profiles from single individuals

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRG.2016.104

Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

Heterogeneous polymerase fidelity and mismatch repair bias genome variation and composition.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

Asymmetric Context-Dependent Mutation Patterns Revealed through Mutation-Accumulation Experiments

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

Nascent RNA folding mitigates transcription-associated mutagenesis

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRG.2016.104

Simple sequence repeats as advantageous mutators in evolution

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRG.2016.104

Bacterial contingency loci: the role of simple sequence DNA repeats in bacterial adaptation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

The role of variable DNA tandem repeats in bacterial adaptation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

Genome-wide evidence for selection acting on single amino acid repeats

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

Amino acid repeats cause extraordinary coding sequence variation in the social amoeba Dictyostelium discoideum

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

Changes in transcriptional orientation are associated with increases in evolutionary rates of enterobacterial genes

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

On the mutational topology of the bacterial genome

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

Mutation rate, spectrum, topology, and context-dependency in the DNA mismatch repair-deficient Pseudomonas fluorescens ATCC948.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

Mutation rates across budding yeast chromosome VI are correlated with replication timing

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

Human mutation rate associated with DNA replication timing

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

Nucleosomes suppress spontaneous mutations base-specifically in eukaryotes

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

Transcription-coupled DNA repair in prokaryotes

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

Transcription-associated mutagenesis

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

Genomic evidence for elevated mutation rates in highly expressed genes

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

Yeast mutation accumulation experiment supports elevated mutation rates at highly transcribed sites

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

Transcription-associated mutational asymmetry in mammalian evolution

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

Transcription induces strand-specific mutations at the 5' end of human genes

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

Stalled transcription complexes promote DNA repair at a distance.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

No gene-specific optimization of mutation rate in Escherichia coli

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

Replication-transcription conflicts in bacteria.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

Transcription-replication encounters, consequences and genomic instability

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

Unequal fidelity of leading strand and lagging strand DNA replication on the Escherichia coli chromosome

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

Genome-wide coorientation of replication and transcription reduces adverse effects on replication in Bacillus subtilis.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

Co-orientation of replication and transcription preserves genome integrity

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

The replication-related organization of bacterial genomes.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

Is there a role for replication fork asymmetry in the distribution of genes in bacterial genomes?

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

Why highly expressed proteins evolve slowly

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

The relationship among gene expression, the evolution of gene dosage, and the rate of protein evolution

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

Differential requirements for mRNA folding partially explain why highly expressed proteins evolve slowly

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

Why are genes encoded on the lagging strand of the bacterial genome?

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

Evolution rates of genes on leading and lagging DNA strands

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

The evolution of low mutation rates in experimental mutator populations of Saccharomyces cerevisiae

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

Normal mutation rate variants arise in a Mutator (Mut S) Escherichia coli population.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic load

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

Emergence of DNA polymerase ε antimutators that escape error-induced extinction in yeast

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

Mutation and Human Exceptionalism: Our Future Genetic Load

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

Genome sequencing of normal cells reveals developmental lineages and mutational processes

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

Evolution of mutation rates in bacteria

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

Beneficial mutation selection balance and the effect of linkage on positive selection

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

Experimental evolution and the dynamics of genomic mutation rate modifiers

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

Costs and Benefits of High Mutation Rates: Adaptive Evolution of Bacteria in the Mouse Gut

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

The mismatch repair system (mutS, mutL and uvrD genes) in Pseudomonas aeruginosa: molecular characterization of naturally occurring mutants

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

Coevolution with viruses drives the evolution of bacterial mutation rates.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

Evidence for recent, population-specific evolution of the human mutation rate

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRG.2016.104

Synonymous substitution rates in enterobacteria.

31 March 2020

1 reference

12 December 2020

Estimate of the mutation rate per nucleotide in humans

1 reference

12 December 2020

The effect of deleterious alleles on adaptation in asexual populations.

1 reference

12 December 2020

Rates of spontaneous mutation

1 reference

12 December 2020

The rate of adaptation in asexuals

1 reference

12 December 2020

The bioenergetic costs of a gene

1 reference

12 December 2020

Beneficial mutations, hitchhiking and the evolution of mutation rates in sexual populations

1 reference

12 December 2020

The evolution of mutation rates: separating causes from consequences

1 reference

12 December 2020

Identifiers

DOI

10.1038/NRG.2016.104

1 reference

Dimensions Publication ID

8 September 2017

1019805340

0 references

1 reference