(Q90300449)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30018876%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

title

Formal description of sequence-based voucherless Fungi: promises and pitfalls, and how to resolve them (English)

1 reference

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12 April 2020

author

David Leslie Hawksworth

series ordinal

2

object named as

David L Hawksworth

1 reference

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12 April 2020

1

Robert Lücking

1 reference

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12 April 2020

publication date

22 May 2018

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12 April 2020

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12 April 2020

volume

9

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12 April 2020

issue

1

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12 April 2020

page(s)

143-166

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Creative Commons Attribution 4.0 International

12 April 2020

copyright license

start time

22 May 2018

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

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Polymerase chain reaction amplification and sequence analysis of human mutant adenine phosphoribosyltransferase genes: the nature and frequency of errors caused by Taq DNA polymerase

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Apparent recombination or gene conversion in the ribosomal ITS region of a Flammulina (Fungi, Agaricales) hybrid

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12 December 2020

Three nonorthologous ITS1 types are present in a polypore fungus Trichaptum abietinum

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12 December 2020

One Hundred and Seventeen Clades of Euagarics

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12 December 2020

Pyrosequencing for microbial typing

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ITS secondary structure derived from comparative analysis: implications for sequence alignment and phylogeny of the Asteraceae

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Descent with modification: the unity underlying homology and homoplasy as seen through an analysis of development and evolution

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12 December 2020

Rapid identification of fungi by sequencing the ITS1 and ITS2 regions using an automated capillary electrophoresis system

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12 December 2020

Fungal endophytes limit pathogen damage in a tropical tree

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12 December 2020

Bellerophon: a program to detect chimeric sequences in multiple sequence alignments

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12 December 2020

The role of morphological data in phylogeny reconstruction

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12 December 2020

Diversity of non-reducing polyketide synthase genes in the Pertusariales (lichenized Ascomycota): a phylogenetic perspective

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12 December 2020

Approaching the taxonomic affiliation of unidentified sequences in public databases--an example from the mycorrhizal fungi

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12 December 2020

Genome sequencing in microfabricated high-density picolitre reactors

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12 December 2020

Fungal community analysis by large-scale sequencing of environmental samples

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12 December 2020

The perils of DNA barcoding and the need for integrative taxonomy

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12 December 2020

Cryptic speciation in the cosmopolitan and clonal human pathogenic fungus Aspergillus fumigatus

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12 December 2020

At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies

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12 December 2020

Beringian origins and cryptic speciation events in the fly agaric (Amanita muscaria).

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12 December 2020

BAli-Phy: simultaneous Bayesian inference of alignment and phylogeny

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12 December 2020

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

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12 December 2020

Microbial diversity in the deep sea and the underexplored "rare biosphere"

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12 December 2020

Reconstructing the early evolution of Fungi using a six-gene phylogeny

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12 December 2020

Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective

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12 December 2020

Highly efficient concerted evolution in the ribosomal DNA repeats: total rDNA repeat variation revealed by whole-genome shotgun sequence data

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12 December 2020

Research Coordination Networks: a phylogeny for kingdom Fungi (Deep Hypha).

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12 December 2020

Ectomycorrhizal community structure in a xeric Quercus woodland based on rDNA sequence analysis of sporocarps and pooled roots

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12 December 2020

A higher-level phylogenetic classification of the Fungi

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12 December 2020

Accuracy and quality of massively parallel DNA pyrosequencing

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12 December 2020

Diversity and phylogenetic affinities of foliar fungal endophytes in loblolly pine inferred by culturing and environmental PCR.

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12 December 2020

Intra-specific and intra-sporocarp ITS variation of ectomycorrhizal fungi as assessed by rDNA sequencing of sporocarps and pooled ectomycorrhizal roots from a Quercus woodland

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12 December 2020

Natural history and evolutionary principles of gene duplication in fungi

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12 December 2020

Contrasting ectomycorrhizal fungal communities on the roots of co-occurring oaks (Quercus spp.) in a California woodland.

1 reference

12 December 2020

Fungal networks made of humans: UNITE, FESIN, and frontiers in fungal ecology.

1 reference

12 December 2020

Seasonal dynamics of ectomycorrhizal fungus assemblages on oak seedlings in the southeastern Appalachian Mountains

1 reference

12 December 2020

Mining metadata from unidentified ITS sequences in GenBank: a case study in Inocybe (Basidiomycota).

1 reference

12 December 2020

Preserving Accuracy in GenBank

1 reference

12 December 2020

Colloquium paper: are we in the midst of the sixth mass extinction? A view from the world of amphibians

1 reference

12 December 2020

Assessing the performance of single-copy genes for recovering robust phylogenies.

1 reference

12 December 2020

Intragenomic variation of fungal ribosomal genes is higher than previously thought.

1 reference

12 December 2020

Molecular diversity assessment of arctic and borealAgaricustaxa

1 reference

12 December 2020

Repetitive sequence variation and dynamics in the ribosomal DNA array of Saccharomyces cerevisiae as revealed by whole-genome resequencing

1 reference

12 December 2020

Intraspecific ITS variability in the kingdom fungi as expressed in the international sequence databases and its implications for molecular species identification.

1 reference

12 December 2020

Ancient horizontal gene transfer from bacteria enhances biosynthetic capabilities of fungi

1 reference

12 December 2020

Using heterozygosity to estimate a percentage DNA sequence similarity for environmental species' delimitation across basidiomycete fungi

1 reference

12 December 2020

Pleospora species with Stemphylium anamorphs: a four locus phylogeny resolves new lineages yet does not distinguish among species in the Pleospora herbarum clade

1 reference

12 December 2020

Rapid and accurate large-scale coestimation of sequence alignments and phylogenetic trees

1 reference

12 December 2020

Systematic artifacts in metagenomes from complex microbial communities.

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12 December 2020

Accurate determination of microbial diversity from 454 pyrosequencing data

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12 December 2020

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

1 reference

12 December 2020

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

1 reference

12 December 2020

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

1 reference

12 December 2020

CD-HIT Suite: a web server for clustering and comparing biological sequences

1 reference

12 December 2020

Experimental factors affecting PCR-based estimates of microbial species richness and evenness.

1 reference

12 December 2020

An alignment confidence score capturing robustness to guide tree uncertainty

1 reference

12 December 2020

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

1 reference

12 December 2020

The Trichoderma harzianum demon: complex speciation history resulting in coexistence of hypothetical biological species, recent agamospecies and numerous relict lineages.

1 reference

12 December 2020

QIIME allows analysis of high-throughput community sequencing data

1 reference

12 December 2020

Artificial and natural duplicates in pyrosequencing reads of metagenomic data

1 reference

12 December 2020

Current state and perspectives of fungal DNA barcoding and rapid identification procedures

1 reference

12 December 2020

Phylogenetic and ecological analyses of soil and sporocarp DNA sequences reveal high diversity and strong habitat partitioning in the boreal ectomycorrhizal genus Russula (Russulales; Basidiomycota).

1 reference

12 December 2020

GUIDANCE: a web server for assessing alignment confidence scores.

1 reference

12 December 2020

The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits

1 reference

12 December 2020

454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases

1 reference

12 December 2020

A constructive step towards selecting a DNA barcode for fungi

1 reference

12 December 2020

MLTreeMap--accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies

1 reference

12 December 2020

Search and clustering orders of magnitude faster than BLAST

1 reference

12 December 2020

Multigene phylogeny and mating tests reveal three cryptic species related to Calonectria pauciramosa

1 reference

12 December 2020

Species and ecological diversity within the Cladosporium cladosporioides complex (Davidiellaceae, Capnodiales).

1 reference

12 December 2020

pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree

1 reference

12 December 2020

The sequence read archive

1 reference

12 December 2020

Species abundance distributions and richness estimations in fungal metagenomics--lessons learned from community ecology

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12 December 2020

Evolutionary criteria outperform operational approaches in producing ecologically relevant fungal species inventories.

1 reference

12 December 2020

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

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12 December 2020

PICS-Ord: unlimited coding of ambiguous regions by pairwise identity and cost scores ordination

1 reference

12 December 2020

Removing noise from pyrosequenced amplicons

1 reference

12 December 2020

The diversity of Terfezia desert truffles: new species and a highly variable species complex with intrasporocarpic nrDNA ITS heterogeneity

1 reference

12 December 2020

Intragenomic variation in the ITS rDNA region obscures phylogenetic relationships and inflates estimates of operational taxonomic units in genus Laetiporus

1 reference

12 December 2020

Reproducibility and quantitation of amplicon sequencing-based detection

1 reference

12 December 2020

Variability in the IGS1 region of Rhodocollybia laulaha: is it allelic, genomic, or artificial?

1 reference

12 December 2020

Has the Earth’s sixth mass extinction already arrived?

1 reference

12 December 2020

Performance, accuracy, and Web server for evolutionary placement of short sequence reads under maximum likelihood

1 reference

12 December 2020

Determining species boundaries in a world full of rarity: singletons, species delimitation methods

1 reference

12 December 2020

Tasting soil fungal diversity with earth tongues: phylogenetic test of SATé alignments for environmental ITS data

1 reference

12 December 2020

Towards standardization of the description and publication of next-generation sequencing datasets of fungal communities

1 reference

12 December 2020

Species delimitation in fungal endophyte diversity studies and its implications in ecological and biogeographic inferences.

1 reference

12 December 2020

Discovery of novel intermediate forms redefines the fungal tree of life

1 reference

12 December 2020

Progress towards DNA barcoding of fungi

1 reference

12 December 2020

Increasing ecological inference from high throughput sequencing of fungi in the environment through a tagging approach

1 reference

12 December 2020

CLOTU: an online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation

1 reference

12 December 2020

The Fungi: 1, 2, 3 ... 5.1 million species?

1 reference

12 December 2020

Species delimitation in taxonomically difficult lichen-forming fungi: an example from morphologically and chemically diverse Xanthoparmelia (Parmeliaceae) in North America

1 reference

12 December 2020

Aligning short reads to reference alignments and trees

1 reference

12 December 2020

Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits

1 reference

12 December 2020

Endophytic Xylaria (Xylariaceae) among liverworts and angiosperms: phylogenetics, distribution, and symbiosis

1 reference

12 December 2020

Systematic exploration of error sources in pyrosequencing flowgram data

1 reference

12 December 2020

UCHIME improves sensitivity and speed of chimera detection

1 reference

12 December 2020

1 reference

12 December 2020

Archaeorhizomycetes: unearthing an ancient class of ubiquitous soil fungi

1 reference

12 December 2020

ITS, OTUs and beyond—fungal hyperdiversity calls for supplementary solutions.

1 reference

12 December 2020

How many species are there on Earth and in the ocean?

1 reference

12 December 2020

Phylogeny and species delimitation in the genus Coprinellus with special emphasis on the haired species

1 reference

12 December 2020

Disclosing arbuscular mycorrhizal fungal biodiversity in soil through a land-use gradient using a pyrosequencing approach

1 reference

12 December 2020

The Sequence Read Archive: explosive growth of sequencing data.

1 reference

12 December 2020

Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and genome analyzer systems

1 reference

12 December 2020

Fungal community composition in neotropical rain forests: the influence of tree diversity and precipitation

1 reference

12 December 2020

SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees.

1 reference

12 December 2020

Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies

1 reference

12 December 2020

Frullania knightbridgei, a new liverwort (Frullaniaceae, Marchantiophyta) species from the deep south of Aotearoa-New Zealand based on an integrated evidence-based approach

1 reference

12 December 2020

Direct comparisons of Illumina vs. Roche 454 sequencing technologies on the same microbial community DNA sample

1 reference

12 December 2020

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

1 reference

12 December 2020

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

1 reference

12 December 2020

Bioinformatic challenges for DNA metabarcoding of plants and animals

1 reference

12 December 2020

Performance comparison of benchtop high-throughput sequencing platforms

1 reference

12 December 2020

Long branch effects distort maximum likelihood phylogenies in simulations despite selection of the correct model

1 reference

12 December 2020

The amsterdam declaration on fungal nomenclature.

1 reference

12 December 2020

Validation and justification of the phylum name Cryptomycota phyl. nov.

1 reference

12 December 2020

Limits of nuclear ribosomal DNA internal transcribed spacer (ITS) sequences as species barcodes for Fungi.

1 reference

12 December 2020

A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers

1 reference

12 December 2020

Multi-locus species delimitation in closely related animals and fungi: one marker is not enough

1 reference

12 December 2020

Next-generation sequencing of microbial communities in the Athabasca River and its tributaries in relation to oil sands mining activities

1 reference

12 December 2020

Adding unaligned sequences into an existing alignment using MAFFT and LAST.

1 reference

12 December 2020

The status of mycology in Africa: A document to promote awareness

1 reference

12 December 2020

1 reference

12 December 2020

Fungal systematics: is a new age of enlightenment at hand?

1 reference

12 December 2020

ITS1 versus ITS2 as DNA metabarcodes for fungi

1 reference

12 December 2020

Evaluation of the authenticity of a highly novel environmental sequence from boreal forest soil using ribosomal RNA secondary structure modeling.

1 reference

12 December 2020

Characterization of Amoeboaphelidium protococcarum, an algal parasite new to the cryptomycota isolated from an outdoor algal pond used for the production of biofuel

1 reference

12 December 2020

Phylogenetic detection of novel Cryptomycota in an Iowa (United States) aquifer and from previously collected marine and freshwater targeted high-throughput sequencing sets

1 reference

12 December 2020

The nature and frequency of chimeras in eukaryotic metagenetic samples

1 reference

12 December 2020

β-tubulin paralogue tubC is frequently misidentified as the benA gene in Aspergillus section Nigri taxonomy: primer specificity testing and taxonomic consequences

1 reference

12 December 2020

Non-concerted ITS evolution in fungi, as revealed from the important medicinal fungus Ophiocordyceps sinensis

1 reference

12 December 2020

Delimiting species using single-locus data and the Generalized Mixed Yule Coalescent approach: a revised method and evaluation on simulated data sets

1 reference

12 December 2020

Employing 454 amplicon pyrosequencing to reveal intragenomic divergence in the internal transcribed spacer rDNA region in fungi

1 reference

12 December 2020

UPARSE: highly accurate OTU sequences from microbial amplicon reads

1 reference

12 December 2020

A general species delimitation method with applications to phylogenetic placements

1 reference

12 December 2020

Reducing assembly complexity of microbial genomes with single-molecule sequencing

1 reference

12 December 2020

Towards a unified paradigm for sequence-based identification of fungi

1 reference

12 December 2020

Analytical tools and databases for metagenomics in the next-generation sequencing era

1 reference

12 December 2020

Metagenomic species profiling using universal phylogenetic marker genes

1 reference

12 December 2020

Two new computational methods for universal DNA barcoding: a benchmark using barcode sequences of bacteria, archaea, animals, fungi, and land plants

1 reference

12 December 2020

Multiple ITS haplotypes in the genome of the lichenized basidiomycete Cora inversa (Hygrophoraceae): fact or artifact?

1 reference

12 December 2020

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

1 reference

12 December 2020

Internal transcribed spacer 1 secondary structure analysis reveals a common core throughout the anaerobic fungi (Neocallimastigomycota).

1 reference

12 December 2020

A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families

1 reference

12 December 2020

Horizontal gene transfer in eukaryotic plant pathogens.

1 reference

12 December 2020

ITS1: a DNA barcode better than ITS2 in eukaryotes?

1 reference

12 December 2020

Performance comparison of Illumina and ion torrent next-generation sequencing platforms for 16S rRNA-based bacterial community profiling

1 reference

12 December 2020

Fungal biogeography. Global diversity and geography of soil fungi

1 reference

12 December 2020

Bayesian long branch attraction bias and corrections

1 reference

12 December 2020

Archaeorhizomyces borealis sp. nov. and a sequence-based classification of related soil fungal species

1 reference

12 December 2020

CATCh, an ensemble classifier for chimera detection in 16S rRNA sequencing studies

1 reference

12 December 2020

Delimiting Species-Poor Data Sets using Single Molecular Markers: A Study of Barcode Gaps, Haplowebs and GMYC.

1 reference

12 December 2020

Nuclear rRNA transcript processing versus internal transcribed spacer secondary structure

1 reference

12 December 2020

Introducing the Consolidated Species Concept to resolve species in the Teratosphaeriaceae.

1 reference

12 December 2020

Fungi identify the geographic origin of dust samples

1 reference

12 December 2020

MICROBIOLOGY. The invisible dimension of fungal diversity

1 reference

12 December 2020

Scaling laws predict global microbial diversity

1 reference

12 December 2020

A Return to Linnaeus's Focus on Diagnosis, Not Description: The Use of DNA Characters in the Formal Naming of Species

1 reference

12 December 2020

Coming of age: ten years of next-generation sequencing technologies

1 reference

12 December 2020

Basidiomycete yeasts in the cortex of ascomycete macrolichens

1 reference

12 December 2020

Hidden Genetic Diversity in an Asexually Reproducing Lichen Forming Fungal Group

1 reference

12 December 2020

Barcoding lichen-forming fungi using 454 pyrosequencing is challenged by artifactual and biological sequence variation

1 reference

12 December 2020

A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data

1 reference

12 December 2020

Hawksworthiomyces gen. nov. (Ophiostomatales), illustrates the urgency for a decision on how to name novel taxa known only from environmental nucleic acid sequences (ENAS).

1 reference

12 December 2020

Cyphobasidium gen. nov., a new lichen-inhabiting lineage in the Cystobasidiomycetes (Pucciniomycotina, Basidiomycota, Fungi).

1 reference

12 December 2020

Sequence-based classification and identification of Fungi

1 reference

12 December 2020

T-BAS: Tree-Based Alignment Selector toolkit for phylogenetic-based placement, alignment downloads and metadata visualization: an example with the Pezizomycotina tree of life

1 reference

12 December 2020

Secondary structure of nrDNA Internal Transcribed Spacers as a useful tool to align highly divergent species in phylogenetic studies.

1 reference

12 December 2020

Novel soil-inhabiting clades fill gaps in the fungal tree of life

1 reference

12 December 2020

Survey of corticioid fungi in North American pinaceous forests reveals hyperdiversity, underpopulated sequence databases, and species that are potentially ectomycorrhizal

1 reference

12 December 2020

Fungal Diversity Revisited: 2.2 to 3.8 Million Species

1 reference

12 December 2020

MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization.

1 reference

12 December 2020

Fungal nomenclature evolving: changes adopted by the 19th International Botanical Congress in Shenzhen 2017, and procedures for the Fungal Nomenclature Session at the 11th International Mycological Congress in Puerto Rico 2018.

1 reference

12 December 2020

10.5598/IMAFUNGUS.2018.09.01.09

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30018876%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30018876%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

PubMed publication ID

30018876

1 reference