(Q90821363)

English

MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities

scientific article published on 16 October 2019

In more languages

Statements

scholarly article

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json

16 April 2020

MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities (English)

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json

16 April 2020

natural product

1 reference

based on heuristic

inferred from title

21

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json

16 April 2020

William H. Gerwick

24

object named as

William H Gerwick

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json

16 April 2020

Pieter C. Dorrestein

26

object named as

Pieter C Dorrestein

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json

16 April 2020

13

object named as

Jon G Sanders

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json

16 April 2020

Louis-Félix Nothias

11

object named as

Louis Felix Nothias

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json

16 April 2020

Kasthuri Venkateswaran

23

object named as

Kasthuri Venkateswaran

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json

16 April 2020

22

object named as

Rob Knight

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json

16 April 2020

Amina Bouslimani

10

object named as

Amina Bouslimani

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json

16 April 2020

Evgenia Glukhov

6

object named as

Evgenia Glukhov

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json

16 April 2020

Fernando Vargas

8

object named as

Fernando Vargas

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json

16 April 2020

17

object named as

James T Morton

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json

16 April 2020

Hosein Mohimani

28

object named as

Hosein Mohimani

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json

16 April 2020

Pavel A. Pevzner

27

object named as

Pavel A Pevzner

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json

16 April 2020

Alexey A. Gurevich

2

object named as

Alexey Gurevich

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json

16 April 2020

Luke R Thompson

15

object named as

Luke R Thompson

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json

16 April 2020

19

object named as

Alexander Shlemov

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json

16 April 2020

Tal Luzzatto-Knaan

7

object named as

Tal Luzzatto-Knaan

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json

16 April 2020

25

object named as

Lena Gerwick

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json

16 April 2020

18

object named as

Alla Mikheenko

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json

16 April 2020

Kelsey L Alexander

3

object named as

Kelsey L Alexander

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json

16 April 2020

5

object named as

Tiago Leão

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json

16 April 2020

author name string

Liu Cao

1

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json

16 April 2020

C Benjamin Naman

4

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json

16 April 2020

Robby Quinn

9

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json

16 April 2020

Nitin K Singh

12

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json

16 April 2020

Rodolfo A S Benitez

14

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json

16 April 2020

Md-Nafiz Hamid

16

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json

16 April 2020

Anton Korobeynikov

20

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json

16 April 2020

publication date

16 October 2019

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json

16 April 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json

16 April 2020

9

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json

16 April 2020

6

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json

16 April 2020

600-608.e4

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json

16 April 2020

describes a project that uses

Microbial Tracking Payload Series

object has role

International Space Station experiment

1 reference

https://www.nasa.gov/mission_pages/station/research/experiments/explorer/Investigation.html?#id=1569

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

1 reference

30 November 2021

https://opencitations.net/index/coci/api/v1/citations/10.1038/NBT.3597

Mass spectral molecular networking of living microbial colonies

1 reference

3 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.CELS.2019.09.004

Automated genome mining of ribosomal peptide natural products

0 references

The genomisotopic approach: a systematic method to isolate products of orphan biosynthetic gene clusters

0 references

Structure, function and diversity of the healthy human microbiome

0 references

A roadmap for natural product discovery based on large-scale genomics and metabolomics

1 reference

3 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.CELS.2019.09.004

Minimum Information about a Biosynthetic Gene cluster.

0 references

Molecular cartography of the human skin surface in 3D

1 reference

3 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.CELS.2019.09.004

A chemocentric view of the natural product inventory

0 references

Drug discovery and natural products: end of an era or an endless frontier?

0 references

Pep2Path: automated mass spectrometry-guided genome mining of peptidic natural products

0 references

A systematic analysis of biosynthetic gene clusters in the human microbiome reveals a common family of antibiotics.

0 references

The specificity-conferring code of adenylation domains in nonribosomal peptide synthetases

1 reference

3 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.CELS.2019.09.004

NRPquest: Coupling Mass Spectrometry and Genome Mining for Nonribosomal Peptide Discovery

1 reference

3 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.CELS.2019.09.004

Ribosomally synthesized and post-translationally modified peptide natural products: overview and recommendations for a universal nomenclature

0 references

Dereplication of microbial metabolites through database search of mass spectra

1 reference

3 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1038/S41467-018-06082-8

Structural Characterization and Bioactivity Analysis of the Two-Component Lantibiotic Flv System from a Ruminant Bacterium

0 references

A framework for human microbiome research

0 references

Urban park soil microbiomes are a rich reservoir of natural product biosynthetic diversity

1 reference

3 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.CELS.2019.09.004

HUMAN MICROBIOTA. Small molecules from the human microbiota

1 reference

3 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.CELS.2019.09.004

The Earth Microbiome project: successes and aspirations

0 references

A communal catalogue reveals Earth's multiscale microbial diversity

0 references

Using fragmentation trees and mass spectral trees for identifying unknown compounds in metabolomics

0 references

A new approach to evaluating statistical significance of spectral identifications

0 references

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

1 reference

3 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.CELS.2019.09.004

IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites

1 reference

3 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.CELS.2019.09.004

Characterization of the lacticin 481 operon: the Lactococcus lactis genes lctF, lctE, and lctG encode a putative ABC transporter involved in bacteriocin immunity.

0 references

Accelerated Profile HMM Searches

0 references

Strains, functions and dynamics in the expanded Human Microbiome Project

0 references

A large scale prediction of bacteriocin gene blocks suggests a wide functional spectrum for bacteriocins

0 references

Computational approaches to natural product discovery

1 reference

3 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.CELS.2019.09.004

Dereplication of peptidic natural products through database search of mass spectra

1 reference

3 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.CELS.2019.09.004

Draft Genome Sequences of Two Aspergillus fumigatus Strains, Isolated from the International Space Station.

0 references

Mutation-tolerant protein identification by mass spectrometry

0 references

Molecular networking and pattern-based genome mining improves discovery of biosynthetic gene clusters and their products from Salinispora species

0 references

antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences

0 references

An environmental bacterial taxon with a large and distinct metabolic repertoire

1 reference

3 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.CELS.2019.09.004

Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5

0 references

Antibiotics for emerging pathogens

1 reference

3 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.CELS.2019.09.004

Efficiency of database search for identification of mutated and modified proteins via mass spectrometry

0 references

Improved lanthipeptide detection and prediction for antiSMASH

1 reference

3 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.CELS.2019.09.004

DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication

0 references

A new antibiotic kills pathogens without detectable resistance

1 reference

3 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.CELS.2019.09.004

Wewakazole B, a Cytotoxic Cyanobactin from the Cyanobacterium Moorea producens Collected in the Red Sea.

0 references

Protein identification by spectral networks analysis

0 references

Assembling single-cell genomes and mini-metagenomes from chimeric MDA products

0 references

Wewakazole, a novel cyclic dodecapeptide from a Papua New Guinea Lyngbya majuscula

0 references

Metagenome mining reveals polytheonamides as posttranslationally modified ribosomal peptides

0 references

antiSMASH 3.0-a comprehensive resource for the genome mining of biosynthetic gene clusters

0 references

metaSPAdes: a new versatile metagenomic assembler

0 references

MS/MS networking guided analysis of molecule and gene cluster families.

0 references

Coelichelin, a new peptide siderophore encoded by the Streptomyces coelicolor genome: structure prediction from the sequence of its non-ribosomal peptide synthetase.

0 references

Follow the leader: the use of leader peptides to guide natural product biosynthesis.

0 references

A mass spectrometry-guided genome mining approach for natural product peptidogenomics

0 references

Dereplication, sequencing and identification of peptidic natural products: from genome mining to peptidogenomics to spectral networks

2 references

5 May 2024

https://opencitations.net/index/api/v1/citations/10.1039/C5NP00050E

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CELS.2019.09.004

American Gut: an Open Platform for Citizen Science Microbiome Research

2 references

5 May 2024

https://opencitations.net/index/api/v1/citations/10.1128/MSYSTEMS.00031-18

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CELS.2019.09.004

Digitizing mass spectrometry data to explore the chemical diversity and distribution of marine cyanobacteria and algae

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CELS.2019.09.004

Identification of post-translational modifications via blind search of mass-spectra

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CELS.2019.09.004

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CELS.2019.09.004

Draft Genome Sequences from a Novel Clade of Bacillus cereus Sensu Lato Strains, Isolated from the International Space Station.

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CELS.2019.09.004

The re-emergence of natural products for drug discovery in the genomics era.

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CELS.2019.09.004

Increased diversity of peptidic natural products revealed by modification-tolerant database search of mass spectra.

2 references

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CELS.2019.09.004

5 May 2024

https://opencitations.net/index/api/v1/citations/10.1038/S41564-017-0094-2

Discovery of a new peptide natural product by Streptomyces coelicolor genome mining

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CELS.2019.09.004

Genomes to natural products PRediction Informatics for Secondary Metabolomes (PRISM)

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1016/J.CELS.2019.09.004

Identifiers

10.1016/J.CELS.2019.09.004

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json

16 April 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json

16 April 2020

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q90821363&oldid=2146401276"