Wikidata

Wikidata:Property proposal/Nextstrain identifier

< Wikidata:Property proposal

Nextstrain identifier edit

Originally proposed at Wikidata:Property proposal/Natural science

   Not done
DescriptionIdentifier for a virus clade used by the Nextstrain project
Data typeString
Domainvirus (Q808)
Example 1SARS-CoV-2 Omicron variant (Q109739412) → 21K
Example 2SARS-CoV-2 Alpha variant (Q104376647) → 20I (V1)
Example 3SARS-CoV-2 Delta variant (Q107055182) → 21A, 21I, 21J
Example 4SARS-CoV-2 Gamma variant (Q104819269) → 20J (V3)
SourceNextstrain (Q89296216)
Expected completenessalways incomplete (Q21873886)
See alsoPANGO lineage code (P9632)
Wikidata projectWikiProject Taxonomy (Q8503033), WikiProject Medicine (Q4099686)

Motivation edit

Nextstrain (https://nextstrain.org/) is a system for promoting the rapid sharing of virus data, including for influenza and SARS-CoV-2 viruses. It assigns identifiers for individual virus clades. It is complementary to systems such as PANGOLIN and GISAID. -- The Anome (talk) 10:02, 27 November 2021 (UTC)[reply]

Discussion edit

  WikiProject Taxonomy has more than 50 participants and couldn't be pinged. Please post on the WikiProject's talk page instead. This would be very useful right now, as tracking SARS-Cov-2 variants is a live subject right now; this can also be extended to tracking other infectious virus clades, per the Nextstrain mission statement. -- The Anome (talk) 10:02, 27 November 2021 (UTC)[reply]

  Notified participants of WikiProject Medicine Since no-one in the Taxonomy group has yet commented here, I thought I'd bring this to the attention of the Medicine WikiProject. Any comments very welcome. -- The Anome (talk) 00:22, 29 November 2021 (UTC)[reply]

I think it's better use an external identifier with this formatter URL: https://nextstrain.org/groups/neherlab/ncov/21I.Delta Germartin1 (talk) 23:08, 3 December 2021 (UTC)[reply]

  Weak oppose From the examples it seems the property currently only includes the last part of groups/neherlab/ncov/21I.Delta, so it seems specific to something called "neherlab" and COVID-19, not a general property for viruses. --Haansn08 (talk) 02:31, 13 December 2021 (UTC)[reply]

TiagoLubiana 01:35, 16 March 2020 Daniel Mietchen 01:42, 16 March 2020 (UTC)[reply]
Jodi.a.schneider 02:45, 16 March 2020 (UTC)[reply]
Chchowmein 02:45, 16 March 2020 (UTC)[reply]
Dhx1 03:38, 16 March 2020 (UTC)[reply]
Konrad Foerstner 06:02, 16 March 2020 (UTC)[reply]
Netha Hussain 06:19, 16 March 2020 (UTC)[reply]
Bodhisattwa 06:56, 16 March 2020 (UTC)[reply]
Neo-Jay 07:04, 16 March 2020 (UTC)[reply]
John Samuel 07:31, 16 March 2020 (UTC)[reply]
KlaudiuMihaila 07:53, 16 March 2020 (UTC)[reply]
Salgo60 09:11, 16 March 2020 (UTC)[reply]
Andrawaag 10:12, 16 March 2020 (UTC)[reply]
Whidou 10:16, 16 March 2020 (UTC)[reply]
Blue Rasberry 15:07, 16 March 2020 (UTC)[reply]
TJMSmith 16:15, 16 March 2020 (UTC)[reply]
Egon Willighagen 16:49, 16 March 2020 (UTC)[reply]
Nehaoua 20:32, 16 March 2020 (UTC)[reply]
Andy Mabbett (UTC)
Peter Murray-Rust 00:00, 17 March 2020 (UTC)[reply]
Kasyap 02:45, 17 March 2020 (UTC)[reply]
Denny 16:21, 17 March 2020 (UTC)[reply]
Kwj2772 16:56, 17 March 2020 (UTC)[reply]
Joalpe 22:47, 17 March 2020 (UTC)[reply]
Finn Årup Nielsen fnielsen) 10:59, 18 March 2020 (UTC)[reply]
Skim 11:45, 18 March 2020 (UTC)[reply]
SCIdude 15:15, 18 March 2020 (UTC)[reply]
Evolution and evolvability 01:23, 20 March 2020 (UTC)[reply]
Susanna Ånäs (Susannaanas) 07:05, 20 March 2020 (UTC)[reply]
Mlemusrojas 15:30, 20 March 2020 (UTC)[reply]
Yupik 20:23, 20 March 2020 (UTC)[reply]
Csisc 23:05, 20 March 2020 (UTC)[reply]
OAnick 10:26, 21 March 2020 (UTC)[reply]
Gnoeee 12:28, 21 March 2020 (UTC)[reply]
Jjkoehorst 14:27, 21 March 2020 (UTC)[reply]
So9q 08:58, 22 March 2020 (UTC)[reply]
Nandana 14:58, 23 March 2020 (UTC)[reply]
Addshore 15:56, 23 March 2020 (UTC)[reply]
Librarian lena 18:19, 24 March 2020 (UTC)[reply]
Jelabra 19:19, 24 March 2020 (UTC)[reply]
AlexanderPico 23:34, 27 March 2020 (UTC)[reply]
Higa4 02:51, 29 March 2020 (UTC)[reply]
JoranL 19:56, 29 March 2020 (UTC)[reply]
Alejgh 11:04, 1 April 2020 (UTC)[reply]
Will (Wiki Ed)) 17:36, 1 April 2020 (UTC)[reply]
Ranjithsiji 04:47, 2 April 2020 (UTC)[reply]
AntoineLogean 07:35, 2 April 2020 (UTC)[reply]
Hannolans 17:22, 2 April 2020 (UTC)[reply]
Farmbrough 21:15, 3 April 2020 (UTC)[reply]
Ecritures 21:26, 3 April 2020 (UTC)[reply]

  Notified participants of WikiProject COVID-19 TiagoLubiana (talk) 17:01, 21 December 2021 (UTC)[reply]

  Comment as property creator: @The Anome, Haansn08, TiagoLubiana: no activity for almost a year on this page. What should we do? if there is still no activity nor consensus, this property will ultimately be declined. Cheers, VIGNERON (talk) 08:52, 4 September 2022 (UTC)[reply]

I think we need an official policy on property proposal deprecation; e.g. no activity after 6 months it goes to backlog and can be reproposed if still needed (and discussion started from scratch with a link to the archived old discussion). The same could happen if, e.g. 1 year has passed and no consesus was reached. For this one, I think it should be archived and reproposed if needed. TiagoLubiana (talk) 14:03, 7 September 2022 (UTC)

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