Property talk:P1929
Latest comment: 6 years ago by Gstupp in topic Documentation
Documentation
ClinVar Variation ID
identifier in the ClinVar database for human genomic variation
identifier in the ClinVar database for human genomic variation
Applicable "stated in" value | ClinVar (Q20023123) | |||||||||
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Data type | External identifier | |||||||||
Domain | instance of genetic variation (Q349856) (note: this should be moved to the property statements) | |||||||||
Allowed values | According to this template:
RCV000000000.0 - RCV999999999.* (* is an integer representing the release number, will slowly increase with time)
According to statements in the property:
When possible, data should only be stored as statements\d+ | |||||||||
Example | NM 000492.3(CFTR):c.1521 1523delCTT (p.Phe508delPhe) (Q19888172) → 7105 BRAF V600E (Q21851559) → 13961 NM_000277.2(PAH):c.1A>G (p.Met1Val) (Q64401263) → 586 | |||||||||
Source | https://www.ncbi.nlm.nih.gov/clinvar/ | |||||||||
Formatter URL | https://www.ncbi.nlm.nih.gov/clinvar/variation/$1/ | |||||||||
Robot and gadget jobs | Robots will add and edit the Clinvar Accession Numbers on appropriate WD items | |||||||||
Lists |
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Proposal discussion | Proposal discussion | |||||||||
Current uses |
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Search for values |
[create Create a translatable help page (preferably in English) for this property to be included here]
Distinct values: this property likely contains a value that is different from all other items. (Help)
Exceptions are possible as rare values may exist. Exceptions can be specified using exception to constraint (P2303). List of violations of this constraint: Database reports/Constraint violations/P1929#Unique value, SPARQL (every item), SPARQL (by value)
Single value: this property generally contains a single value. (Help)
Exceptions are possible as rare values may exist. Exceptions can be specified using exception to constraint (P2303). List of violations of this constraint: Database reports/Constraint violations/P1929#Single value, SPARQL
Exceptions are possible as rare values may exist. Exceptions can be specified using exception to constraint (P2303).
List of violations of this constraint: Database reports/Constraint violations/P1929#Format, SPARQL
List of violations of this constraint: Database reports/Constraint violations/P1929#Format, SPARQL
Scope is as main value (Q54828448), as reference (Q54828450): the property must be used by specified way only (Help)
List of violations of this constraint: Database reports/Constraint violations/P1929#Scope, hourly updated report, SPARQLAllowed entity types are Wikibase item (Q29934200): the property may only be used on a certain entity type (Help)
Exceptions are possible as rare values may exist. Exceptions can be specified using exception to constraint (P2303). List of violations of this constraint: Database reports/Constraint violations/P1929#Entity types
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Changed to Clinvar variation ID
editSince this property had only one use, and that use incorrectly used the Clinvar accession in place of the variation ID, I've repurposed this property to Clinvar variation ID (e.g. https://www.ncbi.nlm.nih.gov/clinvar/variation/7105/) which points to a specific variant, instead of the accession (e.g. https://www.ncbi.nlm.nih.gov/clinvar/RCV000007523.8/, which points to a variant:phenotype interaction. The one use used an accession # on an item about the variant only. Since we only currently have items about variant and not variant:phenotype interactions, it makes more sense to use the variation ID. The accession could be used down the line. Gstupp (talk) 00:50, 11 November 2017 (UTC)