Property talk:P1917

Latest comment: 5 years ago by Gtsulab in topic Specifying PTM Type

Documentation

posttranslational modification association with
This property should link a protein-coding gene to a disease where the encoded protein is associated with a posttranslation modification
Representspost-translational protein modification (Q898362)
Data typeItem
Domain
According to this template: gene (Q7187), protein (Q8054)
According to statements in the property:
gene (Q7187)
When possible, data should only be stored as statements
Allowed valuesWikidata Item ID (Q*) with subclass disease (Q12136) (note: this should be moved to the property statements)
ExampleMITF (Q14906495)skin melanoma (Q18558032)
SourceClinvar, Pubmed (note: this information should be moved to a property statement; use property source website for the property (P1896))
Robot and gadget jobsRobots will add this property to the appropriate WD items.
Lists
Proposal discussionProposal discussion
Current uses
Total3
Main statement266.7% of uses
Qualifier133.3% of uses
Search for values
[create Create a translatable help page (preferably in English) for this property to be included here]
Value type “disease (Q12136): This property should use items as value that contain property “subclass of (P279)”. On these, the value for subclass of (P279) should be an item that uses subclass of (P279) with value disease (Q12136) (or a subclass thereof). (Help)
Exceptions are possible as rare values may exist. Exceptions can be specified using exception to constraint (P2303).
List of violations of this constraint: Database reports/Constraint violations/P1917#Value type Q12136, SPARQL
Scope is as main value (Q54828448): the property must be used by specified way only (Help)
List of violations of this constraint: Database reports/Constraint violations/P1917#Scope, hourly updated report, SPARQL
Allowed entity types are Wikibase item (Q29934200): the property may only be used on a certain entity type (Help)
Exceptions are possible as rare values may exist. Exceptions can be specified using exception to constraint (P2303).
List of violations of this constraint: Database reports/Constraint violations/P1917#Entity types
Type “gene (Q7187): item must contain property “instance of (P31), subclass of (P279)” with classes “gene (Q7187)” or their subclasses (defined using subclass of (P279)). (Help)
Exceptions are possible as rare values may exist. Exceptions can be specified using exception to constraint (P2303).
List of violations of this constraint: Database reports/Constraint violations/P1917#Type Q7187, SPARQL

Specifying PTM Type

edit

I'm interested in adding a qualifier on the type of post-translational modification (phosphorylation, N-linked glycosylation, sumoylation, etc.) Does anyone have suggestions on the best property to use for such a qualifier? For example, the phosphorylation of alpha-synuclein at S129 is associated with Parkinson's disease. In this case, I would create a statement on the page for alpha synuclein (Q288591): Post-translational modification associated with(P1917), value: Parkinson's disease (Q11085). Qualifier: property (need suggestions for this), value: protein phosphorylation (Q7251493). Thanks -- Gtsulab (talk) 21:10, 31 July 2019 (UTC)Reply

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