Property talk:P353
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HGNC gene symbol
The official gene symbol approved by the HGNC, which is typically a short form of the gene name.
The official gene symbol approved by the HGNC, which is typically a short form of the gene name.
| Description | The official gene symbol for a gene - from Human Genome Organisation (Q641168). | |||||||||
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| Represents | HUGO Gene Nomenclature Committee (Q1646383) | |||||||||
| Data type | External identifier | |||||||||
| Template parameter | |Symbol= from en:Template:GNF Protein box or equivalents, Template:GNF Protein box (Q14412152) | |||||||||
| Domain | According to this template:
Genes - subclasses of gene (Q7187)
When possible, data should only be stored as statements | |||||||||
| Allowed values | [A-Z][0-9A-Za-z]{0,13}@?(-[0-9A-Z][0-9A-Za-z]{0,6})* (1 to 14 alphanumeric characters, starting with a letter (uppercase or capitalized); may be suffixed by 1 to 7-digit alphanumeric, separated with a dash) | |||||||||
| Usage notes | See syntax details | |||||||||
| Example | RELN (Q414043) → RELN ACHE (Q407983) → ACHE | |||||||||
| Source | http://www.genenames.org/ | |||||||||
| Formatter URL | https://www.genenames.org/tools/search/#!/all?query=$1 | |||||||||
| Robot and gadget jobs | https://bitbucket.org/sulab/pygenewiki (See also en:Portal:Gene Wiki) | |||||||||
| Lists |
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| Proposal discussion | Proposal discussion | |||||||||
| Current uses |
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| Search for values |
[create Create a translatable help page (preferably in English) for this property to be included here]
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Type “gene (Q7187), noncoding DNA (Q1458444)”: element must contain property “instance of (P31)” with classes “gene (Q7187), noncoding DNA (Q1458444)” or their subclasses (defined using subclass of (P279)). (Help) Exceptions are possible as rare values may exist. List of this constraint violations: Database reports/Constraint violations/P353#type Q7187, Q1458444, SPARQL, SPARQL (new) |
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Format “ Exceptions are possible as rare values may exist. [A-Z][0-9A-Za-z]{0,13}@?(-[0-9A-Z][0-9A-Za-z]{0,6})*”: value must be formatted using this pattern (PCRE syntax). (Help)List of this constraint violations: Database reports/Constraint violations/P353#Format, SPARQL, SPARQL (new) |
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Distinct values: this property likely contains a value that is different from all other items. (Help) Exceptions are possible as rare values may exist. List of this constraint violations: Database reports/Constraint violations/P353#Unique value, SPARQL (every item), SPARQL (by value), SPARQL (new) |
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Single value: this property generally contains a single value. (Help) List of this constraint violations: Database reports/Constraint violations/P353#Single value, hourly updated report, SPARQL, SPARQL (new)
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Scope is as main value (Q54828448): the property must be used by specified way only (Help) List of this constraint violations: Database reports/Constraint violations/P353#scope, hourly updated report, SPARQL, SPARQL (new)
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Allowed entity types are Wikibase item (Q29934200): the property may only be used on a certain entity type (Help) Exceptions are possible as rare values may exist. List of this constraint violations: Database reports/Constraint violations/P353#allowed entity types, SPARQL (new) |
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This property is being used by: Please notify projects that use this property before big changes (renaming, deletion, merge with another property, etc.) |
Can this property be renamed to HGNC gene symbol?Edit
Is it possible to rename a property? The term "gene symbol" implies that it also applies on other species then Human only. Given its description and formatter URL, the property is clearly focused on human genes. With this property being renamed to HGNC gene symbol. A MGI gene symbol for mouse can be proposed to cater mouse genes. Andrawaag (talk) 20:19, 19 October 2015 (UTC)
Support That makes sense as mixing different databases and formatter urls will not work and is not a good approach. Sebotic (talk) 23:23, 19 October 2015 (UTC)- Support Makes sense and stabilizes the property as more species are added to Wikidata. Putmantime (talk) 23:40, 19 October 2015 (UTC)
links no longer validEdit
Since there is no exact match link on the HGNC database for a name (except the ID entry which is linked to by HGNC ID (P354)) I propose to make this property's value text-only. Does it suffice to remove the formatter URL?. --SCIdude (talk) 07:59, 15 August 2019 (UTC)