Property talk:P1057
Documentation
chromosome on which an entity is localized
Description | the chromosome on which an entity is localized | ||||||||||||
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Represents | chromosome (Q37748) | ||||||||||||
Data type | Item | ||||||||||||
Domain | According to this template:
any item that can be localized to a set of genomic coordinates, e.g. a gene (Q7187), sequence variant (Q15304597), etc
According to statements in the property:
When possible, data should only be stored as statementsgene (Q7187), sequence variant (Q15304597), noncoding DNA (Q1458444) or chromosome abnormality (Q744962) | ||||||||||||
Allowed values | any type of chromosome (Q37748) (see latest list), e.g. human chromosome 1 (Q430258), mouse chromosome 1 (Q14864323) (note: this should be moved to the property statements) | ||||||||||||
Example | RELN (Q414043) → human chromosome 7 (Q657319) rs267601217 (Q15304616) → human chromosome 7 (Q657319) GUF1 (Q14331135) → mouse chromosome 5 (Q15304656) | ||||||||||||
Robot and gadget jobs | To be populated by the Gene Wiki bot | ||||||||||||
Tracking: usage | Category:Pages using Wikidata property P1057 (Q29168735) | ||||||||||||
Lists | |||||||||||||
Proposal discussion | Proposal discussion | ||||||||||||
Current uses |
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Search for values |
List of violations of this constraint: Database reports/Constraint violations/P1057#Value type Q37748, SPARQL
List of violations of this constraint: Database reports/Constraint violations/P1057#Type Q7187, Q15304597, Q1458444, Q744962, SPARQL
This property is being used by: Please notify projects that use this property before big changes (renaming, deletion, merge with another property, etc.) |
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Replaces P643
editUse this property instead of P643 (P643). LaddΩ chat ;) 02:16, 11 February 2014 (UTC)
remove allowed type non-coding RNA
editI'm very sorry but RNA in general has no direct assocation with a chromosome. It may have an association with a gene or pseudogene. Mixing pseudogenes with RNA in one object is simply laziness and will hurt people or AIs in later searches. --SCIdude (talk) 07:29, 20 August 2019 (UTC) Ok, there may be a need for those cases where the DNA is intergenic, so I'll add the class noncoding DNA. So every genic noncoding RNA/intergenic RNA needs an pseudogene/noncoding DNA association for specifying the chromosome. --SCIdude (talk) 07:42, 20 August 2019 (UTC)
- @SCIdude: I agree with you on principle, but this currently creates constraint violations in all microRNA articles such as hsa-mir-6085 (Q27591293), so we should probably remove the P1057 property from these and ensure they all have encoded by (P702) ? --Hannes Röst (talk) 18:01, 8 October 2020 (UTC)
- Exactly, there are 4,558 such items (microRNA and mature microRNA). Note there are multiple issues like strand orientation, genomic start/end (should be both on gene), and the genes having P31+P279-->non-coding RNA. Of course, this is on my list but not at the top. --SCIdude (talk) 06:49, 9 October 2020 (UTC)