(Q38567338)

4 September 2017

title

Clinical value of whole-genome sequencing of Mycobacterium tuberculosis (English)

1 reference

Mycobacterium tuberculosis

4 September 2017

main subject

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whole genome sequencing

1 reference

Howard E Takiff

1

1 reference

4 September 2017

Oscar Feo

series ordinal

2

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4 September 2017

publication date

12 August 2015

1 reference

Lancet Infectious Diseases

4 September 2017

published in

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4 September 2017

volume

15

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4 September 2017

issue

9

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4 September 2017

page(s)

1077-1090

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A glimpse into the past and predictions for the future: the molecular evolution of the tuberculosis agent

4 September 2017

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

Whole genome sequencing of Mycobacterium tuberculosis reveals slow growth and low mutation rates during latent infections in humans

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

A recently evolved sublineage of the Mycobacterium tuberculosis Beijing strain family is associated with an increased ability to spread and cause disease

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7 January 2021

Mycobacterium tuberculosis strains of the modern sublineage of the Beijing family are more likely to display increased virulence than strains of the ancient sublineage

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

Mutation in mce operons attenuates Mycobacterium tuberculosis virulence

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7 January 2021

Modulation of transcriptional and inflammatory responses in murine macrophages by the Mycobacterium tuberculosis mammalian cell entry (Mce) 1 complex

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7 January 2021

Deletion of two-component regulatory systems increases the virulence of Mycobacterium tuberculosis

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

Deciphering the growth behaviour of Mycobacterium africanum

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7 January 2021

Genes required for mycobacterial growth defined by high density mutagenesis

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7 January 2021

Why doesn’t Mycobacterium tuberculosis spread in animals?

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7 January 2021

The catalase-peroxidase gene and isoniazid resistance of Mycobacterium tuberculosis

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7 January 2021

Efflux pump of the proton antiporter family confers low-level fluoroquinolone resistance in Mycobacterium smegmatis

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7 January 2021

Tuberculosis drug discovery in the post-post-genomic era

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7 January 2021

Identification of new drug targets and resistance mechanisms in Mycobacterium tuberculosis

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7 January 2021

A diarylquinoline drug active on the ATP synthase of Mycobacterium tuberculosis

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7 January 2021

Why are membrane targets discovered by phenotypic screens and genome sequencing in Mycobacterium tuberculosis?

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7 January 2021

Multitarget drug discovery for tuberculosis and other infectious diseases

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7 January 2021

Novel insights into the mechanism of inhibition of MmpL3, a target of multiple pharmacophores in Mycobacterium tuberculosis

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7 January 2021

Genetic Strategies for Identifying New Drug Targets

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7 January 2021

Multidrug-resistant tuberculosis in panama is driven by clonal expansion of a multidrug-resistant Mycobacterium tuberculosis strain related to the KZN extensively drug-resistant M. tuberculosis strain from South Africa

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7 January 2021

Four decades of transmission of a multidrug-resistant Mycobacterium tuberculosis outbreak strain

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7 January 2021

GWAMAR: genome-wide assessment of mutations associated with drug resistance in bacteria

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7 January 2021

Effect of katG mutations on the virulence of Mycobacterium tuberculosis and the implication for transmission in humans.

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7 January 2021

Mechanism of thioamide drug action against tuberculosis and leprosy

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7 January 2021

Compensatory ahpC gene expression in isoniazid-resistant Mycobacterium tuberculosis.

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7 January 2021

Molecular genetic basis of antimicrobial agent resistance in Mycobacterium tuberculosis: 1998 update

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7 January 2021

Effect of rpoB mutations conferring rifampin resistance on fitness of Mycobacterium tuberculosis

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7 January 2021

The competitive cost of antibiotic resistance in Mycobacterium tuberculosis

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7 January 2021

Whole-genome sequencing of rifampicin-resistant Mycobacterium tuberculosis strains identifies compensatory mutations in RNA polymerase genes.

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

Fitness-compensatory mutations in rifampicin-resistant RNA polymerase.

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7 January 2021

EthA, a common activator of thiocarbamide-containing drugs acting on different mycobacterial targets

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7 January 2021

The Rapid Development of Fluoroquinolone Resistance inM. tuberculosis

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7 January 2021

Current prospects for the fluoroquinolones as first-line tuberculosis therapy

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7 January 2021

Mycobacterium tuberculosis population structure determines the outcome of genetics-based second-line drug resistance testing

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7 January 2021

Subpopulation analysis of heteroresistance to fluoroquinolone in Mycobacterium tuberculosis isolates from Beijing, China

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Dynamic population changes in Mycobacterium tuberculosis during acquisition and fixation of drug resistance in patients

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Whole genome sequencing reveals complex evolution patterns of multidrug-resistant Mycobacterium tuberculosis Beijing strains in patients

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Evolution of extensively drug-resistant Mycobacterium tuberculosis from a susceptible ancestor in a single patient

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Genomic analysis identifies targets of convergent positive selection in drug-resistant Mycobacterium tuberculosis

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

A phylogeny-based sampling strategy and power calculator informs genome-wide associations study design for microbial pathogens.

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Genome sequencing of 161 Mycobacterium tuberculosis isolates from China identifies genes and intergenic regions associated with drug resistance

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Genetic characterisation of the ethambutol resistance-determining region in Mycobacterium tuberculosis: prevalence and significance of embB306 mutations

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Evolution of high-level ethambutol-resistant tuberculosis through interacting mutations in decaprenylphosphoryl-β-D-arabinose biosynthetic and utilization pathway genes

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Genome-level analyses of Mycobacterium bovis lineages reveal the role of SNPs and antisense transcription in differential gene expression

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Mapping of genotype-phenotype diversity among clinical isolates of mycobacterium tuberculosis by sequence-based transcriptional profiling

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Mutations in the regulatory network underlie the recent clonal expansion of a dominant subclone of the Mycobacterium tuberculosis Beijing genotype

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

PolyTB: a genomic variation map for Mycobacterium tuberculosis

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Genome-wide Mycobacterium tuberculosis variation (GMTV) database: a new tool for integrating sequence variations and epidemiology

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

tbvar: A comprehensive genome variation resource for Mycobacterium tuberculosis

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Tuberculosis drug resistance mutation database

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

MGDD: Mycobacterium tuberculosis genome divergence database

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

MTCID: a database of genetic polymorphisms in clinical isolates of Mycobacterium tuberculosis

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

dbSNP: the NCBI database of genetic variation

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

TB database: an integrated platform for tuberculosis research

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

TubercuList--10 years after

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

TBrowse: an integrative genomics map of Mycobacterium tuberculosis

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Pyrosequencing for rapid detection of extensively drug-resistant Mycobacterium tuberculosis in clinical isolates and clinical specimens

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Evaluation of pyrosequencing for detecting extensively drug-resistant Mycobacterium tuberculosis among clinical isolates from four high-burden countries

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Prediction of Staphylococcus aureus antimicrobial resistance by whole-genome sequencing.

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

The usefulness of whole genome sequencing in the management of Staphylococcus aureus infections.

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

KvarQ: targeted and direct variant calling from fastq reads of bacterial genomes.

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

PhyResSE: a Web Tool Delineating Mycobacterium tuberculosis Antibiotic Resistance and Lineage from Whole-Genome Sequencing Data

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

MUBII-TB-DB: a database of mutations associated with antibiotic resistance in Mycobacterium tuberculosis

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Whole-genome sequencing for prediction of Mycobacterium tuberculosis drug susceptibility and resistance: a retrospective cohort study

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Rapid determination of anti-tuberculosis drug resistance from whole-genome sequences

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Whole genome sequencing based characterization of extensively drug-resistant Mycobacterium tuberculosis isolates from Pakistan

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Transmitted Extended-Spectrum Extensively Drug-Resistant Tuberculosis in Beijing, China, with Discordant Whole-Genome Sequencing Analysis Results

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Towards genomic prediction of drug resistance in tuberculosis.

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Clinical application of whole-genome sequencing to inform treatment for multidrug-resistant tuberculosis cases

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

SNP/RD typing of Mycobacterium tuberculosis Beijing strains reveals local and worldwide disseminated clonal complexes

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

High resolution discrimination of clinical Mycobacterium tuberculosis complex strains based on single nucleotide polymorphisms

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

A robust SNP barcode for typing Mycobacterium tuberculosis complex strains.

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Fast and low-cost decentralized surveillance of transmission of tuberculosis based on strain-specific PCRs tailored from whole genome sequencing data: a pilot study.

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Combined species identification, genotyping, and drug resistance detection of Mycobacterium tuberculosis cultures by MLPA on a bead-based array

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Optimizing multiplex SNP-based data analysis for genotyping of Mycobacterium tuberculosis isolates

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Transfer of a Mycobacterium tuberculosis genotyping method, Spoligotyping, from a reverse line-blot hybridization, membrane-based assay to the Luminex multianalyte profiling system

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

The use of microbead-based spoligotyping for Mycobacterium tuberculosis complex to evaluate the quality of the conventional method: providing guidelines for Quality Assurance when working on membranes

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Tuberculosis-spoligo-rifampin-isoniazid typing: an all-in-one assay technique for surveillance and control of multidrug-resistant tuberculosis on Luminex devices

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Two new rapid SNP-typing methods for classifying mycobacterium tuberculosis complex into the main phylogenetic lineages

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Construction of a virtual Mycobacterium tuberculosis consensus genome and its application to data from a next generation sequencer

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Biomimetic nanopores: a new age of DNA sequencing?

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

A first look at the Oxford Nanopore MinION sequencer

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Culture-independent detection and characterisation of Mycobacterium tuberculosis and M. africanum in sputum samples using shotgun metagenomics on a benchtop sequencer

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Whole-genome sequences of Chlamydia trachomatis directly from clinical samples without culture

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Genomic sequencing of uncultured microorganisms from single cells

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

A proportion of mutations fixed in the genomes of in vitro selected isogenic drug-resistant Mycobacterium tuberculosis mutants can be detected as minority variants in the parent culture

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Mycobacterial DNA extraction for whole-genome sequencing from early positive liquid (MGIT) cultures

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Feasibility of magnetic bead technology for concentration of mycobacteria in sputum prior to fluorescence microscopy

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Magnetic bead protocol for culturing Mycobacterium tuberculosis from sputum specimens

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Increased case finding of tuberculosis from sputum and sputum deposits after magnetic bead concentration of mycobacteria

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Rapid Whole-Genome Sequencing of Mycobacterium tuberculosis Isolates Directly from Clinical Samples

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Xpert MTB/RIF: a new pillar in diagnosis of extrapulmonary tuberculosis?

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Call for a quality standard for sequence-based assays in clinical microbiology: necessity for quality assessment of sequences used in microbial identification and typing

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

Assuring the quality of next-generation sequencing in clinical laboratory practice

1 reference

https://api.crossref.org/works/10.1016%2FS1473-3099%2815%2900071-7

7 January 2021

10.1016/S1473-3099(15)00071-7

Identifiers

DOI

1 reference

4 September 2017

1 reference