(Q64974172)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31217225%20AND%20SRC:MED&resulttype=core&format=json

2 May 2020

review article

2 references

7 April 2021

Current best practices in single-cell RNA-seq analysis: a tutorial (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31217225%20AND%20SRC:MED&resulttype=core&format=json

2 May 2020

1 reference

1 reference

0 references

gene expression profiling

1 reference

7 April 2021

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31217225%20AND%20SRC:MED&resulttype=core&format=json

2 May 2020

Malte D Luecken

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31217225%20AND%20SRC:MED&resulttype=core&format=json

2 May 2020

language of work or name

English

0 references

publication date

19 June 2019

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31217225%20AND%20SRC:MED&resulttype=core&format=json

2 May 2020

7 April 2021

Molecular Systems Biology

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31217225%20AND%20SRC:MED&resulttype=core&format=json

2 May 2020

7 April 2021

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31217225%20AND%20SRC:MED&resulttype=core&format=json

2 May 2020

page(s)

e8746

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31217225%20AND%20SRC:MED&resulttype=core&format=json

2 May 2020

issue

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31217225%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution

2 May 2020

copyright license

1 reference

7 April 2021

0 references

describes a project that uses

Jupyter notebook file

1 reference

EdgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

DESeq2

object named as

DESeq2

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

limma

object named as

limma

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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Massively parallel digital transcriptional profiling of single cells

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Testing for differential abundance in mass cytometry data

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Normalizing single-cell RNA sequencing data: challenges and opportunities

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12 December 2020

ASAP: a Web-based platform for the analysis and interactive visualization of single-cell RNA-seq data

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12 December 2020

Simultaneous epitope and transcriptome measurement in single cells

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12 December 2020

Extracting Intercellular Signaling Network of Cancer Tissues using Ligand-Receptor Expression Patterns from Whole-tumor and Single-cell Transcriptomes

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Distinct Mesenchymal Lineages and Niches Promote Epithelial Self-Renewal and Myofibrogenesis in the Lung.

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Gene Regulatory Network Inference from Single-Cell Data Using Multivariate Information Measures

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Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications.

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Bias, robustness and scalability in single-cell differential expression analysis

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Evaluation of tools for highly variable gene discovery from single-cell RNA-seq data

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12 December 2020

An accurate and robust imputation method scImpute for single-cell RNA-seq data.

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12 December 2020

Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors

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12 December 2020

Integrating single-cell transcriptomic data across different conditions, technologies, and species

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12 December 2020

scmap: projection of single-cell RNA-seq data across data sets

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12 December 2020

Using single-cell genomics to understand developmental processes and cell fate decisions.

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Exploring the single-cell RNA-seq analysis landscape with the scRNA-tools database

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12 December 2020

Recovering Gene Interactions from Single-Cell Data Using Data Diffusion

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A revised airway epithelial hierarchy includes CFTR-expressing ionocytes

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12 December 2020

A single-cell atlas of the airway epithelium reveals the CFTR-rich pulmonary ionocyte

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12 December 2020

RNA velocity of single cells

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12 December 2020

Molecular Diversity and Specializations among the Cells of the Adult Mouse Brain

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12 December 2020

Molecular Architecture of the Mouse Nervous System

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Impulse model-based differential expression analysis of time course sequencing data

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12 December 2020

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12 December 2020

Comparison of clustering tools in R for medium-sized 10x Genomics single-cell RNA-sequencing data

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12 December 2020

A systematic performance evaluation of clustering methods for single-cell RNA-seq data

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12 December 2020

Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris

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12 December 2020

Lung Single-Cell Signaling Interaction Map Reveals Basophil Role in Macrophage Imprinting

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12 December 2020

Single-cell reconstruction of the early maternal–fetal interface in humans

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12 December 2020

Deep generative modeling for single-cell transcriptomics.

1 reference

12 December 2020

Dimensionality reduction for visualizing single-cell data using UMAP

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12 December 2020

A test metric for assessing single-cell RNA-seq batch correction

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12 December 2020

Single-cell RNA-seq denoising using a deep count autoencoder

1 reference

12 December 2020

An atlas of the aging lung mapped by single cell transcriptomics and deep tissue proteomics

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12 December 2020

PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells

1 reference

12 December 2020

False signals induced by single-cell imputation

1 reference

12 December 2020

A comparison of single-cell trajectory inference methods

1 reference

12 December 2020

DoubletFinder: Doublet Detection in Single-Cell RNA Sequencing Data Using Artificial Nearest Neighbors

1 reference

12 December 2020

Scrublet: Computational Identification of Cell Doublets in Single-Cell Transcriptomic Data

1 reference

12 December 2020

Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-Seq

1 reference

12 December 2020

diffcyt: Differential discovery in high-dimensional cytometry via high-resolution clustering

1 reference

12 December 2020

On lines and planes of closest fit to systems of points in space

1 reference

https://opencitations.net/index/coci/api/v1/references/10.15252/MSB.20188746

DoubletDecon: Cell-State Aware Removal of Single-Cell RNA-Seq Doublets

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.15252/MSB.20188746

Fast unfolding of communities in large networks

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.15252/MSB.20188746

How to Use t-SNE Effectively

1 April 2022

1 reference

https://opencitations.net/index/coci/api/v1/references/10.15252/MSB.20188746

1 April 2022

Identifiers

DOI

10.15252/MSB.20188746

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31217225%20AND%20SRC:MED&resulttype=core&format=json

2 May 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31217225%20AND%20SRC:MED&resulttype=core&format=json

2 May 2020

1 reference